Pirellula sp. SH-Sr6A: VN12_23000
Help
Entry
VN12_23000 CDS
T04360
Symbol
rpoN2
Name
(GenBank) RNA polymerase sigma-54 factor 2
KO
K03092
RNA polymerase sigma-54 factor
Organism
pir
Pirellula sp. SH-Sr6A
Pathway
pir02020
Two-component system
pir02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
VN12_23000 (rpoN2)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
VN12_23000 (rpoN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pir03021
]
VN12_23000 (rpoN2)
Transcription machinery [BR:
pir03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VN12_23000 (rpoN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
LacI
HTH_23
HTH_Tnp_ISL3
LEM
HTH_Crp_2
MarR
RPA_C
DUF745
Motif
Other DBs
NCBI-ProteinID:
AMV35013
LinkDB
All DBs
Position
5626382..5627872
Genome browser
AA seq
496 aa
AA seq
DB search
MRLSFGLEARQIQTQKLAPRMIQSMEILQLPILALQERIEQEMNENPMLEVEERDESLPD
EEHDDTVNPNASRTEDEKELVVQDGQSNAEDFERLANMDGDMPDTFDDFRRSSNRVQEDA
DRAHDLMANAAERPESLNDYLLHQLAELDIEEEVERIAERIISCLDARDGGYLKTSLADI
LPPDHKPADLQVAERALAVVQSMEPAGIAARTLQECLLNQIRPDDYLSEEMRTVISQHLD
DLAENRLPVIQKKTGYSLELIKEIREELHRLNPKPGAAFMEVIVPLVTPDVIVEPNEEGV
YTVRLVDDSLPPLRISEYYRRRLGDPTATEEEREFIKRKIGSAQWLIESIQQRQRTLTKV
SQEIVNYQKKFLDEGPEAIEPLKMQQIADKVGVHVTTVSRAVDDKWIQTPRGIFPLRRFF
VFGTTSADGEDVAYETIRMKLQEIIDKEDKSNPLSDDDLVEQLKKHGLGVARRTITKYRK
KMGIPSSRQRRDWTKT
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctttcgttcggactcgaagcgcgccagatccaaacgcagaagctggctccacgg
atgatccagtcgatggagattttgcaattgccgattctggcattgcaggagcggatcgag
caggaaatgaacgagaatcccatgctcgaagtggaggagcgggatgagagtttgcctgac
gaggagcacgacgacaccgtcaatccgaacgcatcgcggacggaggacgagaaggagtta
gtggttcaggacgggcagtctaacgccgaggacttcgagcgtttagcgaacatggacggg
gacatgcccgacacgttcgatgattttcgtcgctcgagcaatcgggtgcaggaagacgcg
gaccgagcgcatgatttgatggccaacgctgccgagcgtcctgaatccctcaacgattac
ttgcttcaccaattggcggagttggatatcgaggaggaggtcgagcggattgccgagcgg
attatttcttgtttggacgcccgcgacggtggttacttgaagacctcgctggccgacatt
ctgccaccggaccacaagccagcggacttgcaggtggcggagcgcgctttggccgtggtg
cagtcgatggagcctgcggggattgcggctcgaacgcttcaggagtgtttgctcaaccag
atccgtcccgatgattatttgtcggaggaaatgcgaacggtcatttctcagcatttggat
gatctcgcggagaatcgcttgccggtcattcaaaagaagaccgggtattcgttggagctg
atcaaggagatccgcgaagagttgcatcgcctcaatccgaagccgggcgcggctttcatg
gaggtgattgttccgttggtgacccccgatgtgattgtggaaccgaacgaagagggagtg
tacaccgttcgattggtggacgattccttgcccccgcttcgtatcagcgagtactaccga
cgcaggctgggggatcctacagcgacggaagaggaacgggagtttatcaagcgcaagatt
ggcagcgcccagtggttgatcgagtccattcagcaacggcaaaggacattgacaaaggtt
tcacaggagattgtcaattaccagaagaagtttttggacgaaggtcccgaggcgattgag
ccgctcaaaatgcagcagattgccgacaaagtaggagtgcacgtcaccacggtttcccgc
gcggtcgatgacaaatggatacaaactcctcgcggtattttccctttgcgtcgattcttt
gtttttgggacaaccagtgcggacggtgaagacgtcgcgtacgagacgattcggatgaag
ctccaagagattatcgacaaagaagacaaatcgaatcctcttagcgatgacgatttggtc
gagcagctcaagaaacatggcttgggtgtcgctcgccgaaccattaccaagtaccgcaaa
aaaatgggaattcctagcagccgccagcgtcgcgattggacgaaaacttag
DBGET
integrated database retrieval system
