Pirellula sp. SH-Sr6A: VN12_23210
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Entry
VN12_23210 CDS
T04360
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pir
Pirellula sp. SH-Sr6A
Pathway
pir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VN12_23210 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pir03019
]
VN12_23210 (pnp)
03016 Transfer RNA biogenesis [BR:
pir03016
]
VN12_23210 (pnp)
Enzymes [BR:
pir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
VN12_23210 (pnp)
Messenger RNA biogenesis [BR:
pir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VN12_23210 (pnp)
Transfer RNA biogenesis [BR:
pir03016
]
Prokaryotic type
tRNA degradation factors
VN12_23210 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KhpA-B_KH
KH_2
Motif
Other DBs
NCBI-ProteinID:
AMV35055
UniProt:
A0A142Y782
LinkDB
All DBs
Position
complement(5711150..5713591)
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AA seq
813 aa
AA seq
DB search
MVKIRVEKQIGDSVLSFETGALAKQATSSVVCQYGDTVVFIATTTGPSRPGTDFFPLTCD
YRERFAAAGKFPGGFLKRESRPTTKETLTSRLIDRPIRPLFPDGFIDEVQVQAIVMSSDV
QNDADVLAMNGAAAALFISPLPFQGPISSCRVGKVEGKLIAFPTHAQLEESELDMIVSAN
EREVMMIEGFAQEMPEAEMLEAIKFAHDVCKQVIELQREFFDKVKPTKTTFDSPDTTELM
AKLRADYYERFKEAKQIEGKQARNEACSALKAEAVSALIPDPSAEGAICTNQLSHVWHTL
ENQVVRDLILSGRRSDGRDAKSLRPIHCETDLLPRTHGTALFQRGETQAFITVTLGTPRD
EQRVDGLVDEYSKKFMLDYNFPPFSVGECRPIRAPGRREIGHGMLAERSLEAVLPDPEDF
PYTIRVISDILESNGSSSMASVCGGCLGLMAAGVPITNPVAGISIGLVREKDQHVLLTDI
IGDEDHFGDMDFKISGTQNGITGIQLDLKIPGVSEEIIRGTLKQAREARIEILRKMLTCI
PRPRSETSRFAPRLLRTKIEPDKIGALIGPGGKNIRAIQEETGVTIDVDDEGNVTVASAD
AESAKRAIGRVEACTATVQIGKIYDGIVSSVRDFGAFVEILPGKDGLCHISELSSGYVAS
VDSVCKVGDAMKVIVIDIDDHDRVKLSRRRALEELGMEDEFAAPSEESDDLDDFGGDDLG
DDIGFDEKPERADRPERTEARTGDRGGRGRGGDRGGDRGGDRGSSGGSGGGGGGFRRGGG
RGRSRGGSGGGSGGGGGRSSGGDRGGDRGGDRR
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
gtggtaaagattcgtgtagaaaaacaaattggcgattcggttctctcgttcgagacaggg
gctttggccaagcaagccacttccagcgtcgtatgccaatacggcgatactgtcgtgttc
atcgcgacgacgaccggcccgtcccgtccaggaactgacttcttcccgctcacatgcgat
tatcgcgaacgattcgcagcagcgggtaagtttcccggcggtttcctcaaaagggaaagt
cgcccgacgaccaaagaaacgctcaccagtcgcttgatcgaccgtcctatccgccccctc
ttcccagacgggttcattgacgaagtccaagtccaggcgattgtgatgagttcggacgtt
caaaacgacgctgacgttctcgccatgaacggcgctgcagcggctttgtttatcagtcca
cttcctttccaaggcccgatctcttcatgccgagttggcaaagtggaaggcaagctgatt
gcgttccccacccacgctcaactcgaagagagcgaactcgacatgatcgtttcggcaaac
gaacgagaagtcatgatgatcgaaggcttcgcgcaagaaatgcctgaagcggagatgttg
gaagcgatcaagtttgcacatgatgtctgcaagcaagtgatcgaacttcaacgcgagttc
ttcgataaggtcaaaccgaccaagaccacttttgattcgccagatacgaccgaactgatg
gcgaaactgcgagcggattactacgaacgcttcaaggaagcgaagcaaatcgaaggcaaa
caagctcgcaacgaagcttgctcggcgctcaaagcagaagcggtctcggctttgatcccc
gacccatccgccgaaggggccatttgtaccaaccaactcagccacgtttggcacactttg
gaaaatcaagttgttcgcgatttgattctttcggggcgacgttccgatggtcgcgacgcg
aagagtttgcgacccatccactgtgaaaccgatttgcttcctcgcacgcatggtacggct
ctgttccaacggggtgagacccaagcgttcattacggtgactcttggtacaccgcgagac
gaacaacgcgtcgacggattggtggatgagtacagcaagaaattcatgctggactacaac
ttcccgccattctccgtgggtgagtgccgtcctattcgcgcaccgggccgccgagaaatt
ggccacgggatgcttgcagaacgatccttggaagccgtgcttcccgaccccgaagatttc
ccttacacaattcgtgtgatcagcgacatcctcgagagcaatggttcgtcgtcgatggcc
agcgtttgcggtggctgtctcggattgatggcagccggggttcccatcaccaaccccgtc
gcagggatcagcatcggtcttgttcgtgaaaaagaccagcatgtactgctcaccgacatc
atcggtgacgaagatcacttcggcgacatggatttcaaaatttcgggaacgcaaaacgga
atcaccggaatccagttggatctgaagatcccaggcgttagcgaagaaatcatccgtggc
acgctcaagcaagcgcgtgaagctcggatcgaaattctccgcaagatgctgacgtgtatt
cctcgtccgcgcagcgaaaccagccgtttcgcacctcgattgcttcgaaccaagatcgag
cccgacaagatcggcgcgttgatcggtcctggtggtaagaacatccgagcgatccaggaa
gaaaccggagtgaccatcgacgtcgatgatgaaggcaatgtaactgtcgcttcggcagac
gccgagtcggcgaagcgagccatcggtcgcgtggaggcctgcacggcaacggtccaaatc
ggcaagatctatgatgggatcgtctcgagcgtacgggacttcggcgcgttcgtcgaaatc
ctccccggtaaggacggactctgccacatcagcgaactctccagcggctatgtcgcgagt
gtcgactcggtatgcaaggtcggggatgcgatgaaggtaatcgtcatcgacatcgatgat
cacgaccgcgtgaagctctcccgacgccgagcattggaagagctgggtatggaagatgaa
ttcgcagcaccatcggaagagtcagacgatctcgatgacttcggtggcgatgatctcggc
gatgacattggctttgatgaaaagccagagcgagccgatcggccagaacggaccgaagca
cgcacgggagatcgcggaggtcgcgggcgaggcggtgaccgaggcggtgaccgaggcggt
gatcgtggaagcagcggtggcagcgggggaggcggaggcggattccgacgcggtggcgga
cggggccgaagccgtggcggtagcggtggtggcagtggcggtggcggcggccggtccagc
ggtggagaccgcggtggcgatcgcggcggggaccgccggtag
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