Pirellula sp. SH-Sr6A: VN12_24210
Help
Entry
VN12_24210 CDS
T04360
Name
(GenBank) Collagen triple helix repeat (20 copies)
Organism
pir
Pirellula sp. SH-Sr6A
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-ProteinID:
AMV35251
UniProt:
A0A142Y7T4
LinkDB
All DBs
Position
5923802..5927158
Genome browser
AA seq
1118 aa
AA seq
DB search
MSSTNAQKIRGGKAMRGLPEFPNEPMPLWIDPTGQLSAAEINALPPDLENYVPKSRELTI
NGVAYDLSEDREWDLAIEGPPGPQGEQGPQGEPGPQGIQGIQGEPGPAGPKGDTGDVGPQ
GIQGEPGPKGDKGDPGEIGPIGPSGPQGIPGATGAQGPKGDPGEKGDPGTSVTLKGSVAT
VADLDDIVSPTTGDLYVVVADGEGYVFNGSTWDNVGPIRGPKGDKGDTGATGSQGEPGPQ
GIQGEPGPKGDKGDPGEPGPQGLTGPQGETGPTGATGPQGIQGEPGPAGPAGPTGATGPE
GPAGAIGPQGPKGETGPQGIPGEPGAVGPAGPEGPQGPQGLQGEPGPTGATGPQGIQGIQ
GEPGPAGPKGDTGDTGPQGVTGPQGEPGAPGPKGDKGDTGDVGPIGPTGPIGPQGDPGSI
GPAGPQGETGPQGEPGVQGEVGPQGEAGPQGATGPQGPQGIPGEPGDAGPMGPTGPIGPA
GPQGEQGPQGIQGIQGEPGPTGPTGATGPQGPQGLQGIQGETGPAGPTGATGPQGIQGIQ
GETGPAGPAGVPGPQGPQGIPGPSGADGDGIAYFGQVTLSSGAAAPPSFGDYVALSGTPT
LLTGANGFSAGASGLSIQNTSSDTLLVQAHASIVLTQGTNKILRVIFYKNSTPINTSEKE
SPTTPDVNLVELTTEALVELAPSDVLSLRVTSVNSTDVITASLGSLIVGTIGRQGTPGPK
GDKGDQGDPGVGGGSPGGSNTHIQFNDDGEFGGTSGFVFNPITICVGINTSVPTSKLDIV
GQDGMRITGVEPYMTMRDSSAFLAGVRLKNVGSSLVFSVDTTGAGTFTDKAIFTSDCNLG
VNMINPTSRVDVVGQDGLRVTGFQPFITLRDSNDSNKGFRIQTWAGNTILLNDAVGDGTF
VERLRVTGNGNVAVGAEVPLARLHVRSSNAAAAARLDNNSSDNATLVIDQTVPSTASRPA
IVLMKGGTTCLVLSCDGMAPGQTYYDAQGVNGLHQFFTQGAERFKIDSTGIKTTGHIAGS
YSLLGPNSTAMPFASVTVVQLPVSAPLTLTSSVPAAGTICFLIIESQGTNSRTVNFNPSH
FFVAGAVNTGAVAGKTFTLTFISNGNRLIETGRAGPAG
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgaccaacgcgcagaaaattcgaggtggcaaagcgatgcggggactccctgag
tttccgaacgagccgatgcccctgtggattgatccaacgggtcaactcagcgcagcggaa
atcaatgctttgcctccggacttggagaactacgttccgaagtcgcgcgagcttaccatc
aatggtgtcgcttacgatcttagtgaagatcgtgaatgggacctggcaatcgagggaccg
ccggggccccagggcgaacaaggcccgcagggtgagcccggtccgcaaggtatccaggga
attcagggagagccgggaccagccggcccaaaaggtgataccggtgatgttggcccacaa
ggaatccaaggtgaaccaggtcctaaaggggacaagggtgatcccggagagatcggtccc
atcggtccatcaggtccccaaggcattcctggagcgactggcgcacaaggtcccaagggt
gatcccggtgaaaagggagatcccggtaccagcgtgacgctcaagggaagcgtcgctacg
gttgctgatctggacgacattgtaagtccgacaacgggtgacctatatgttgtcgtggcc
gatggagaagggtatgtattcaatggctcaacatgggataacgtcggtcccattcgcggt
cccaaaggggacaaaggcgacaccggtgcaacgggtagtcagggagagcctggcccacaa
ggcatccagggagaacctggtccgaagggtgataagggagatcccggagaacctggaccg
caaggcttaactggtccccagggtgaaaccggtccgacaggcgcaacggggcctcaaggc
atccaaggtgagcctgggccagcggggcctgcaggcccaacgggcgcgactggtccggaa
ggcccagcgggtgcaatcggtccgcagggacctaaaggagaaactggcccgcaaggcatt
ccgggcgaacctggcgctgtaggtccagcaggaccggaaggcccacaaggtccgcagggg
cttcagggcgagcctggcccgacaggcgcaacaggccctcaaggcattcaaggaatccaa
ggcgaaccgggaccggcaggtcccaaaggggacaccggagatacgggcccacagggcgta
actggcccgcaaggggaacctggcgcaccaggtccaaaaggcgataaaggtgataccggt
gatgttggtcccataggtccaaccggtcccattggtccccagggcgatcccggttcaatc
ggtccagccgggccgcagggtgagactggtccccagggggaacccggtgttcaaggagag
gttggacctcaaggagaagcgggcccacagggggctaccggtccccaaggtccgcagggc
atccctggtgaaccgggagacgcaggtccaatgggaccaaccggcccaatagggcctgcc
gggcctcagggtgaacagggcccgcaaggtatacaaggcattcaaggcgaaccaggtcca
acgggaccgaccggcgcgacaggtcctcaggggccacaaggcttgcaaggcatacagggc
gagaccggtcccgctggtccgacgggcgctaccggaccgcaggggattcagggtatccaa
ggcgaaacaggaccagccggccccgctggcgtgccaggtccgcaggggccacaaggaatc
cccggaccaagcggtgccgatggcgatggtattgcctacttcggccaagtgactctttcg
agcggcgcagcagctccaccgagcttcggagactatgttgcgctatcgggtacaccaact
ctcttgacgggcgccaatggattctctgctggggcttcgggactctctattcagaacaca
agcagcgatacgttgctggtgcaagcgcatgcgtcaatcgttttgacgcaaggcaccaac
aagatccttcgggtgatcttctacaagaacagcactcccatcaacacatccgagaaggaa
tcgccaacaactccggatgtgaatctcgtcgagctcacgaccgaggcactcgtcgagctt
gcaccatcggatgtgctttccctgcgtgtaacgtctgtcaattcaaccgatgtgatcacg
gcttcgctgggtagtctcattgtcggaacgatcggccgacaagggacacctggccccaag
ggtgataaaggtgaccaaggcgatcctggtgttggcggtggttcaccgggtggatcgaac
acgcatattcagttcaacgacgacggagagtttgggggaacgagcggattcgtcttcaat
ccaataactatctgtgttggcatcaacaccagcgttcccacatccaaattggatatcgtg
ggacaagatggtatgcgcatcaccggtgttgaaccgtacatgaccatgcgcgatagcagt
gcgttcttggctggggtacggcttaaaaacgtcgggagcagcttggtgttctcggtggat
accacgggagctggaacgttcactgacaaggcgatattcacatcggattgcaatcttggc
gtgaacatgatcaacccaacctcaagggtcgatgtggtcggtcaggatgggctacgtgtt
acgggattccagccgttcatcacgcttcgcgactctaatgattccaacaagggattccga
atccaaacttgggcaggaaacacaatcctcttgaacgacgccgttggtgacggaactttc
gtcgagagactccgagtcacgggtaacgggaacgtcgctgttggcgccgaagtgccgtta
gcgaggttgcatgttcggagttccaacgcagcagcggctgcaagattggacaacaacagt
tcagacaacgcaacattggtcatcgatcaaactgtgccgagcactgcgtcgcgccctgcc
atcgtccttatgaaaggcggcacgacctgtttagttttgtcttgtgacgggatggcgccg
ggccaaacctattatgacgcgcagggagttaatggacttcatcagttcttcacccagggc
gcagaacgattcaaaatcgacagcactggaataaaaacaactggtcacatcgctggcagc
tatagcctccttggtcctaacagcactgcgatgccgtttgcttcggttaccgttgtgcaa
ctacccgtgtctgcacctctgacgttgacgtcatcggtacctgctgcggggaccatttgc
tttctgatcattgaatctcagggcactaactctcggaccgttaacttcaatccctcccac
tttttcgtcgctggcgcggtgaatactggagcggtggctgggaagacctttactctcacg
ttcatttcaaacgggaaccgtttgattgaaacaggaagggcggggccagccggatga
DBGET
integrated database retrieval system
