KEGG   Pirellula sp. SH-Sr6A: VN12_24420
Entry
VN12_24420        CDS       T04360                                 
Name
(GenBank) hypothetical protein
  KO
K10848  DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
pir  Pirellula sp. SH-Sr6A
Pathway
pir03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pir00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    VN12_24420
   03460 Fanconi anemia pathway
    VN12_24420
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pir03032]
    VN12_24420
   03400 DNA repair and recombination proteins [BR:pir03400]
    VN12_24420
DNA replication proteins [BR:pir03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    VN12_24420
DNA repair and recombination proteins [BR:pir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     VN12_24420
SSDB
Motif
Pfam: ERCC4
Other DBs
NCBI-ProteinID: AMV35293
UniProt: A0A142Y7V6
LinkDB
Position
5980686..5981138
AA seq 150 aa
MDFRIVVDSREQEPYKFSCEVVNAKLDAGDYSVVGFEQRVAVERKSLRDFVGTVIHDFDR
FARELAKLSAMESACIVVEADLTAVLCGEHADALRAVTPQSLLGASAYIDTRFRVPVYWC
GSRSAAARFTDTYLRSFVRVISNGGDLHRE
NT seq 453 nt   +upstreamnt  +downstreamnt
atggatttccgaatcgttgtggactcgcgagaacaagagccttacaagttttcgtgcgag
gtagtgaatgccaagctggatgcgggtgattactcggtggttggcttcgaacagcgagtg
gccgtcgagcgcaaaagcctgcgtgatttcgttggtaccgtcatccacgactttgatcgc
ttcgctcgtgaacttgccaagctgtccgcgatggaatcggcgtgtatcgttgtcgaagcc
gatctaaccgcagtgctctgtggggaacacgcggacgctcttcgtgctgtgacgccacag
tccttgttgggggcgtccgcttacattgacaccagatttcgggtgcccgtctactggtgc
ggatcgcgatctgcggccgctcgattcacggatacctacctgcgatcgttcgttcgcgtg
atctccaatgggggagatctgcaccgtgagtaa

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