Pirellula sp. SH-Sr6A: VN12_24425
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Entry
VN12_24425 CDS
T04360
Symbol
recD2_2
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pir
Pirellula sp. SH-Sr6A
Pathway
pir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VN12_24425 (recD2_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pir03400
]
VN12_24425 (recD2_2)
Enzymes [BR:
pir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VN12_24425 (recD2_2)
DNA repair and recombination proteins [BR:
pir03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VN12_24425 (recD2_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
UvrD_C_2
AAA_11
SH3_13
Viral_helicase1
AAA_22
OB_YrrC
UvrD-helicase
Helicase_RecD
AAA_16
SLFN-g3_helicase
nSTAND3
PhoH
DEAD
SRP54
AAA_12
CbiA
HerA_C
T2SSE
AAA_28
Thymidylate_kin
PIF1
ResIII
NACHT
TrwB_AAD_bind
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AMV35294
UniProt:
A0A142Y843
LinkDB
All DBs
Position
5981113..5983299
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AA seq
728 aa
AA seq
DB search
MGEICTVSNRISGTVDRVFFTSAKFSAGSLVRDDGERVRFRGPFCVSEGELITLTGQWKS
DPKYGPQFDAKSVSYDLPETPEGLVQYLAKHPAFTGIGETTARKIVSYVASAEHLDRVIR
HDVQELNRALRIPKRTLHSLREAWIANSAENEVRSYLAGFGLSHHQMETLLEEFGASVVG
VLRANPYLIIRYIKGYGFKRVDKIARSMGVPKEHPGRIESALCYLVREEASDGHTWIAHD
DLIRKAIDLLLLDSLDCRSIIEGALKRVVDQNQLIIDGDAVALTSYVEAERLIYECFELY
GQDVDPIGIEPAHGAGLKRSQLAAYEAAMRHSIVVISGGAGTGKTHTLARLAKTFQDANL
RIALCSPTGKAAKRIEESLRNQGLELDAKTIHRLLEYNGHEYQRKSLSPPDDDGSLDVSS
SDGFDVIIIDEFSMVDVPLLAELLRRINLDRTRLILVGDHNQLPPVGPGNVIRDCIEHKL
VPTFILDEVVRQAGVLKTNSMAILSQRVMPTVGSDPAWSVIDSLKEPMQIQVYLRDLVLN
RIPGRLGLDPVNDVQIITPTHLGQLGTKAINQMMQYLLHGVVDRKFAVGDKVIQTSNDYG
LGIMNGTIGIVSEIETADGTKYIVDFDGEGRRPIQDEQILNLQLAYAMTAHKAQGSEFPC
VVVLCHKSHFFADRNWLYTAVTRASRYCIVVGDRWGLGNAVKKNSVSERRTFLDRWAKAN
LEYWEVLL
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgggggagatctgcaccgtgagtaatcgtatcagtggtacggtcgatcgtgttttcttc
accagcgcgaaattctccgctggctcacttgttcgcgacgacggcgagcgcgtgcgattt
cgtgggcctttctgtgtaagtgaaggtgaactgatcacgctcacgggacagtggaaaagc
gatccaaagtacggtccccaattcgacgcgaagagtgtgagttacgatttgcccgagacg
cctgaaggattggtgcagtaccttgctaaacatcctgcgtttactggcatcggagaaacc
acagctcgcaaaatcgtttcgtatgtcgccagcgcggaacacctggatcgcgtgattcgc
cacgacgttcaggagttgaaccgagccctacggattcccaaacgaaccctccattcgctg
cgtgaagcttggatcgccaatagtgccgagaacgaagtccgatcgtatttggccggcttt
gggctctcccatcaccaaatggagacgctactcgaggaattcggcgcttcggtggttggc
gttcttcgtgcgaatccctatttgatcatccgctacatcaagggctatggcttcaagcgg
gtcgacaagatcgctcgctcaatgggtgtacctaaagagcacccgggcaggatcgaatcc
gcgctgtgttacctggttcgcgaagaggcgtccgatggccatacgtggatcgcgcacgac
gatttgattcgcaaggcgatcgatctgctgttgctcgattcactcgattgtcgctcgatc
attgagggtgcgctcaagagggtggttgatcagaaccagctcatcatcgatggcgatgct
gtcgctcttactagctatgtggaagccgagcgactgatctacgaatgttttgagctttac
gggcaagatgtagatcccatcggaatcgagcccgcgcatggggctggacttaagcgatcg
caattggctgcctacgaggccgccatgagacactcgattgttgtgatttccggtggagcc
ggtactggcaagacgcatactctagcgcgactggcgaagacttttcaggatgcgaatctc
aggattgcactctgttcgccaacgggcaaagctgccaaacggatcgaggaatcattgagg
aaccaaggcctcgagctagatgccaagacgatccatcgtttgcttgaatacaacggacat
gagtatcagagaaaaagtctatcgcctccagatgacgacgggagtctagacgtttcctct
tccgacggattcgatgtcatcatcatcgacgaattctcgatggtggacgtaccactgttg
gcagagctactgcgtcgaatcaatctcgacaggacgcgattgattctcgtcggtgatcac
aatcagctaccccctgttggcccaggaaacgtaattcgagactgcatcgaacacaaactc
gtaccgaccttcattctggatgaggtcgtacgccaagcgggcgtcctgaaaaccaacagc
atggcgatactctcacagagagtgatgccaacggttggtagcgatcccgcctggagcgtt
atcgattcactcaaagaaccgatgcaaattcaggtttacctgcgtgatctagttttgaat
cgcattccgggccggcttggcctggatccggtcaacgacgtgcagatcatcacgccgacg
catttggggcaacttggtaccaaagcgatcaaccagatgatgcaatatctgttgcatggc
gtggttgatcgaaagtttgccgttggcgacaaggtcatccagacgtccaacgattatggc
ttggggatcatgaacggcacgattggcatcgtgtcggagattgagaccgccgacggaacg
aaatacatcgttgatttcgatggggagggacgccggccaatccaggatgagcagattcta
aatcttcagctcgcttatgcgatgacggctcataaggctcagggaagcgagttcccgtgc
gtggttgttctctgccataagtcgcatttcttcgccgaccgtaactggttgtatacggcg
gtcactcgcgcttcgcggtactgcatcgtggtcggcgatcgctggggactcggcaatgcg
gtgaagaagaacagtgttagcgagcggcgcactttcctggatcgctgggcaaaagcgaat
cttgaatattgggaggtattgctttga
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