Pirellula sp. SH-Sr6A: VN12_25485
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Entry
VN12_25485 CDS
T04360
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pir
Pirellula sp. SH-Sr6A
Pathway
pir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VN12_25485 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pir03019
]
VN12_25485 (deaD)
03009 Ribosome biogenesis [BR:
pir03009
]
VN12_25485 (deaD)
Enzymes [BR:
pir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VN12_25485 (deaD)
Messenger RNA biogenesis [BR:
pir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VN12_25485 (deaD)
Ribosome biogenesis [BR:
pir03009
]
Prokaryotic type
rRNA helicases
VN12_25485 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
Cas3-like_C_2
Utp25_C
HEM4
AFOR_N
Motif
Other DBs
NCBI-ProteinID:
AMV35469
UniProt:
A0A142Y8C1
LinkDB
All DBs
Position
6171924..6173729
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AA seq
601 aa
AA seq
DB search
MSTPIEEMTDAAAPSNGFLTLGLPEPICNDLAAAGYHTPTSIQAATIPSLLTGQDVLGQA
QTGTGKTAAFALPLLCRIDVNDSSPQVLVLAPTRELAIQVAESFERYGKSMRGLHVACLY
GGSGYAQQIQALRQRPQIIVGTPGRVMDHMREERLKIDKLRCLVLDEADEMLRMGFVDDV
RWVLTQAPADVQIALFSATMPSAIREIADKHLKEPHVVSIAAKEKTADTIRQRYLMIEPK
FKLEVLQRVLEHEPSDGTIIFVKTRNATVEIAEALNRMGYSAVAINGEIAQAQRERTIEQ
LKDGSVQILVATDVAARGLDVQRITHVINYDLPFDTEAYIHRIGRTGRAGRDGEAILFIT
PRQRGFLKDIHRAIGKAIEPMEVPTVREINQARITRLKTKIASQVEVDQQDSLSAERFKK
WIEECCEEHQFSIEQAATALAKLCTGERPFLLPEEDSLDRALRGRDRRDRDDRGPRDDRD
GFSRGRTKTPRFDPREQRGEFEGGDASGPRDESPRAGMELFRVEVGRQHGVKPGNLVGAI
ANEIELDSSYIGQITIFDEHSTVYLPKGMPRDLFKILGRAWVVGRQLRISKLADRQRVRS
R
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgagtactcccatcgaagagatgacggacgctgctgcgccgtcgaatggttttttgact
ttaggattgcccgagcccatttgcaacgatttggccgcggcggggtatcacaccccgact
tctatccaggccgccacgattcccagtttgttgaccggacaagatgtgttgggccaggcc
cagacggggaccgggaaaacggctgcctttgctctgcctcttttgtgccgaatcgacgtc
aacgattcctcccctcaagtcctggtgttggctccgacgcgggagctagccatccaggtt
gccgagtctttcgagcgttacggaaagtcgatgcgagggcttcatgtcgcttgtttgtac
ggcggaagcggatatgcccagcagattcaagctttaaggcagcggcctcaaatcatagtc
ggaacgcccggccgagtgatggatcacatgcgcgaggagcgtttgaagatcgataagctc
cggtgtttggtcctcgacgaagcggatgagatgttgcggatggggtttgtcgacgacgtg
cggtgggttttgacccaagcacccgcggatgtacagatcgccctgttttcagcaaccatg
cccagcgcgattcgagagatcgccgacaaacatctgaaggagccgcatgtcgtttcgatt
gctgcgaaggaaaaaacggccgatacgatccgccagcgatacttgatgattgaacccaaa
ttcaaattggaagtactgcagcgagtcctggagcatgaaccttccgatggcaccattatc
ttcgtcaagacacgcaacgcgaccgtcgagatcgcagaagcgctcaatcgcatgggttat
agcgccgtcgcgatcaatggtgagattgctcaggcgcagcgcgagcgaacgattgaacaa
ttgaaggatggctctgtccaaattttggtagcgacggatgttgctgctcgcggtttggac
gtccagcgcattacccatgtgatcaactacgacctgcccttcgataccgaagcctatatt
caccgaatcggtcgaaccggcagagcgggacgtgatggcgaagccatactatttatcacc
ccaaggcagcgcgggtttcttaaggatatccaccgcgcgatcggaaaagcgatcgagccg
atggaagttcctaccgtgcgcgagatcaatcaagcccgaattacacgattaaaaacgaag
attgcaagccaagtcgaagtagatcagcaggattctttatcggctgaaaggtttaagaag
tggattgaggagtgctgcgaggaacaccagttcagcattgagcaagccgccacggcatta
gcaaagctctgcaccggagaacgcccgtttctcttgcccgaagaagactcgcttgatcga
gcactccgtggccgagatcggcgggatcgggacgatcgtgggcctcgagatgatcgcgac
ggattctcgcgcggtcggaccaagacacctcgttttgatcctcgcgagcaacgcggcgag
tttgaggggggggatgcctcggggcctcgcgacgaatccccgagagcaggcatggagctg
tttcgagttgaagtcggccgtcagcatggggtcaaaccaggtaacttggttggcgcgatt
gccaacgagattgaactggactcgagctacatcggtcagatcaccatcttcgatgagcat
agcactgtctatttgccaaaaggaatgccgcgagacttgttcaagattcttggccgagct
tgggtagtaggtcggcagcttcgcatttcgaaattggctgatcgtcagcgtgttcgtagc
cgttaa
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