Pyrobaculum islandicum: Pisl_0302
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Entry
Pisl_0302 CDS
T00444
Name
(GenBank) SMC domain protein
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pis
Pyrobaculum islandicum
Brite
KEGG Orthology (KO) [BR:
pis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pis03400
]
Pisl_0302
DNA repair and recombination proteins [BR:
pis03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Pisl_0302
Archaeal homologous recombinant proteins
Pisl_0302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
AAA_23
AAA_13
AAA_15
AAA_21
AAA_29
ABC_tran
AAA_16
AAA_27
Baculo_PEP_C
EAD9
Rad50_zn_hook
GAS
MAD
DUF7310
KASH_CCD
DUF1664
DUF3087
DUF7748
SbcC_Walker_B
PA28_C
COG6_N
Crescentin
AAA_30
TPR_MLP1_2
Rpr2
AAA
DUF3450
DNA_ligase_ZBD
V_ATPase_I
Occludin_ELL
Motif
Other DBs
NCBI-ProteinID:
ABL87480
UniProt:
A1RR98
LinkDB
All DBs
Position
301918..304026
Genome browser
AA seq
702 aa
AA seq
DB search
MIRKIELYNFKAHAKAVFKFGEGVNFIYGPNGSGKTSIMEAVSIALFGSQWVRRVGGRWS
DYLKRGASVGEVRLFLNHMGQEVLIVRRFGEEGSSTSGTYLAIDGAVVARGDIDVTNAVV
TKLGIRIDEYRHLLYIRQGELRRILQEPEYIDHILRIDEFDKVDEVVKDVLKELERRRER
VGGRVEELEKRAPQLKAKADALRQRLAEAERKIKELEDAEIKFREVEKRFFELRERYISL
TKEKESLERGLEETASMALEVEKDIERLEEELEFIRRAEEELSTLPELGDVEREYYEVKQ
LVATVEKIPPEVRSYDPKLLEETRRKYEEVSRRYVEVRSRLGLLRDVLRVAKAAERGRCP
VCGAPLTEETVKRHELEALGLEKEEQRLSRLMEQLQTEIKQLETLDKTYRAYAQYLSIDL
QALKKRLAELETLYQRKREVEKKRAYLSGVVARRGEVERRLEELKARKAALEKRIGEING
RLNAVETELKTLATVLTNIEAEYTALKVKHEEFLAAKMFVSELKRQLEDIERELIEVEKE
LEKNRYEVQKLDKALGIARNIRVVIGELKPLARQILTKAINEELNSIFLKLRHKEVFRSV
QLVEIDGKYSIRVNTPAGYIDHRLLSLGEQNLLAISLRVALARALLGGAPFMMFDEPTEH
LDEEHRRKIVELIRDLTSIVPTVVVTSHLGEFEEVADVVIQL
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgattaggaagatagagctgtacaacttcaaggcacatgcaaaagccgtctttaaattt
ggagagggagtaaactttatctacggccctaacggctctggcaaaacctcaataatggag
gctgtgtcaattgccctttttggatctcagtgggttagaagggtggggggtaggtggtct
gattatctaaagaggggggcgtcggtgggggaggtaaggctttttttaaaccatatgggg
caagaggttcttatagtgagaagattcggcgaggaggggagttcaacatctggcacatat
ctcgccatagatggcgccgttgtggctagaggcgatatagatgttaccaacgctgttgta
acaaaattgggcattagaattgacgagtatagacatcttttatatatcagacagggggag
ttgagacggattttacaagagcctgagtatatagaccatatattacgcattgacgaattt
gataaagtagatgaagtagttaaagatgtacttaaagaacttgagaggagacgtgagcga
gttggagggagagttgaagagcttgagaaaagagcgccacaacttaaggcgaaagccgac
gcgcttaggcaaaggcttgcggaagctgaaagaaaaataaaggagcttgaagacgccgag
ataaaatttagagaggttgagaaaaggtttttcgaattgagagagcgctatatatcgttg
acaaaagaaaaggagtctttagaacgtgggcttgaagaaacagcaagcatggctcttgag
gtcgaaaaagacatagagcggttagaagaggagctagagttcatacgccgtgctgaagag
gagttaagtacactcccagagctcggcgatgtggaaagagagtactatgaggttaaacaa
ctagtcgccactgttgaaaaaatcccacctgaggtacgtagttatgacccaaagctactt
gaagaaacaagacgtaaatatgaagaggtaagtaggagatatgtagaggtgaggtctaga
ctcggcttgttaagagatgtattaagagttgcaaaagccgctgagagaggccgttgcccc
gtctgtggagcccctctgactgaagaaactgtgaagagacacgagcttgaggctttagga
cttgagaaagaagagcaacgtctctctaggctcatggaacagttacaaacagagattaaa
cagctggaaactctagacaagacatatagagcctacgcccaatatctctctatagatcta
caagctttaaaaaagaggttagcagaactggagactctatatcagaggaagagagaagtt
gaaaaaaagagggcatatctctcgggagttgtagctaggaggggggaggtagagagacga
ctggaagagctaaaggctcggaaagccgcattagagaagcgcataggggaaattaacggg
agactaaacgctgttgagactgagttaaaaacgcttgcgaccgtattgacaaatatagag
gctgaatataccgctctcaaagtaaaacatgaagagtttctagcggcaaagatgtttgtc
tcagagctaaaacgccaactagaagatatagagagagaacttatagaagttgagaaagaa
cttgaaaaaaatagatatgaggttcagaaattagataaagcgttaggcattgccagaaat
attagagttgtaattggcgaacttaagcctctagctagacagatattgaccaaggcaatt
aacgaagagcttaattcaatatttctaaaactgagacataaggaggttttcagatctgta
caacttgtagagatagatgggaaatatagcattagggtaaatacgcccgccggctatata
gaccacagacttctatcgcttggggagcagaatctcctcgctatatccctccgggtggcg
ctcgccagagccctcctcggcggtgcgccctttatgatgtttgacgaacctactgagcac
ctagacgaggaacacaggagaaagatcgtggaactcataagagacctcacctctatcgtg
ccgacggttgtcgttacatcgcacctcggggaattcgaggaggtggctgacgtggtaata
cagctgtaa
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