Pyrobaculum islandicum: Pisl_1219
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Entry
Pisl_1219 CDS
T00444
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pis
Pyrobaculum islandicum
Brite
KEGG Orthology (KO) [BR:
pis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pis03016
]
Pisl_1219
Enzymes [BR:
pis01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Pisl_1219
Transfer RNA biogenesis [BR:
pis03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Pisl_1219
Prokaryotic type
tRNA splicing ligases
Pisl_1219
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF5617
Motif
Other DBs
NCBI-ProteinID:
ABL88386
UniProt:
A1RTV4
LinkDB
All DBs
Position
complement(1103575..1105029)
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AA seq
484 aa
AA seq
DB search
MGNFPINKVNDYVWEIPPGVKPCQKVPVRIFADSVLLEKMKADLTIEQGINVGCLPGIYK
YSIILPDGHQGYGFPIGGVAAIDAENGVISPGGIGYDINCGVRVLRTNLTEEEVRPKLKE
LVDTIFRLVPPGVGGTGHLKLSPGEFERVLAEGVEWAVQKGYGWAEDMEYIEERGSWKLA
DPSKVSEKAKARGKDQLGTLGSGNHFLEIQVVDKIFDEKVAKVFGIEREGQVLVMIHTGS
RGLGHQVATDYLLIMERNMRRWGLNLPDRELAAAPLNDKVAEDYIKAMAAAANFAWTNRH
IIMHWVREAFKKVFGSIEKVGLELIYDVAHNIAKLEEHIVDDKGTVRRVWVHRKGATRAF
PPGNPEIPAKYRQVGQPVLIPGSMGTASWILVGTPEAMKLTFGTAPHGAGRVLSREAAIR
MYPPHKVQEEMTKRGIIVRSAETEVISEEAPWAYKDVDRVVESTHQVGFAKKVVRQRPIG
VVKG
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgggaaacttccctattaacaaagttaatgattatgtgtgggagattccacctggcgta
aagccgtgtcaaaaagttccagtcaggatatttgctgatagtgtactacttgaaaaaatg
aaggccgacctcaccatcgagcaaggcattaacgtaggctgtctccccggcatttataaa
tacagcataattctcccagacggacatcagggttacggctttcccataggcggcgtagct
gcaattgacgcagaaaacggtgtaatttcgcctggaggcattggttacgatatcaactgt
ggggtccgcgtcttaaggactaatctcacagaggaggaggtcaggccgaagcttaaggag
cttgtagacactatatttagactcgtgccgcctggagtgggaggcacaggccacctcaag
ctgtcgcctggcgaatttgaaagagtacttgcagaaggcgtagagtgggcagtacaaaag
gggtacggctgggctgaagatatggagtatatagaggagagggggtcttggaagcttgca
gacccctctaaagtcagcgaaaaggccaaggcgaggggcaaagatcagttaggcacctta
ggctctgggaaccacttcctagagattcaggtagtagacaagatttttgacgagaaagtg
gccaaagtgtttggcatagagagggagggacaagttctcgtgatgatacacaccgggagc
cgcggccttggacaccaggtggcaacagattatcttttgattatggaaagaaatatgagg
aggtggggcttaaatctgcctgacagagagctggcagcggctcctctcaatgataaagtt
gccgaggattatatcaaggctatggccgcagccgccaattttgcttggacaaaccgccat
ataattatgcattgggttagagaagcctttaagaaggtgtttggctctatagagaaggtg
ggactggagcttatctacgacgttgcgcacaacatcgcaaaacttgaagaacacatagta
gacgacaaaggcacagtgagaagagtgtgggtacaccgcaaaggagcaactagagccttt
ccgcccggaaaccctgagatacctgcaaaatatagacaggtgggccagccagttttaata
ccgggtagcatgggcacggcttcctggatactggtaggcacccctgaagctatgaagctc
accttcggcacggcgccgcatggcgcaggccgcgtcttgagcagagaggccgccattagg
atgtacccgccgcacaaggtgcaagaggagatgacgaagcgtggtatcattgtgagaagc
gcggagaccgaggtgataagcgaggaggcgccgtgggcctacaaggacgtggacagggta
gtggagtcaacccaccaggtgggctttgcgaagaaggtagttaggcagaggcccatcggc
gtggtcaagggataa
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