Pyrobaculum islandicum: Pisl_1800
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Entry
Pisl_1800 CDS
T00444
Name
(GenBank) conserved protein (RNA polymerase related)
KO
K07573
exosome complex component CSL4
Organism
pis
Pyrobaculum islandicum
Pathway
pis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pisl_1800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pis03019
]
Pisl_1800
Messenger RNA biogenesis [BR:
pis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Pisl_1800
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Pisl_1800
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
Zn_ribbon_6
Zn_ribbon_NUD
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
ABL88949
UniProt:
A1RVG7
LinkDB
All DBs
Position
complement(1634342..1634878)
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AA seq
178 aa
AA seq
DB search
MRKKIVTPGEEVAYAEEFETKGSAYSLDFRYLSSVLGIVTYDEKAHVAVVKPVRNPPLPQ
AGAIVYCQVVNKGRRAYQLRCFAVENNREIHDLKYSFTGVLPYFFSDGELGIGDYIRAKV
VSTYGPPLVVSIRGPTYGSVLSRCPRCSSVLKRRGMALYCPNCSIEVKRKIAIGYYSA
NT seq
537 nt
NT seq
+upstream
nt +downstream
nt
gtgagaaagaagattgtgacacctggggaagaggtggcatacgccgaggagtttgaaaca
aaaggaagcgcatatagcctagactttagatatctctcctctgtcttaggcatagtgaca
tatgatgaaaaagcccatgtggctgttgtaaaacctgtgagaaaccccccactgccccag
gcgggagcaatagtctattgccaagtcgtaaacaaggggaggcgggcgtatcaactccgt
tgcttcgctgtagagaacaacagagagatacacgacctaaagtactcatttacgggagtt
ttgccatatttcttctcagacggcgagttaggcattggagactatataagggctaaagtt
gtatctacatacggcccgcctcttgttgtctcaatacgcggccctacctacggctcggtc
ctatcccgttgccccagatgcagctcggtgcttaaaagacgcggcatggcactctattgt
ccaaactgctcaatagaagtcaagaggaaaatcgccataggatactacagcgcttaa
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