Prevotella intermedia: PIN17_A0447
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Entry
PIN17_A0447 CDS
T02058
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pit
Prevotella intermedia
Brite
KEGG Orthology (KO) [BR:
pit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pit03032
]
PIN17_A0447 (topA)
03400 DNA repair and recombination proteins [BR:
pit03400
]
PIN17_A0447 (topA)
Enzymes [BR:
pit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PIN17_A0447 (topA)
DNA replication proteins [BR:
pit03032
]
Prokaryotic type
DNA Topoisomerases
PIN17_A0447 (topA)
DNA repair and recombination proteins [BR:
pit03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PIN17_A0447 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
SBP_bac_3
Viral_P18
Motif
Other DBs
NCBI-ProteinID:
AFJ09456
LinkDB
All DBs
Position
II:complement(440689..443034)
Genome browser
AA seq
781 aa
AA seq
DB search
MQENLVIVESPAKAKTIEKFLGEDFKVMSSYGHIRDLKKKELSVDLDTLEANYEIPDEKK
KVVSELKKNAKAAKKVWLASDEDREGEAISWHLCEVLGLDEEKTSRIVFHEITKSAILAA
IQNPRRLDMNLVNAQQARRVLDRLVGFRLSPVLWRKVKPALSAGRVQSVAVRLIVERERE
IQAFKSEPYYRVNAIFAASSEDGTKNEVKAELNKRFATHEEALAFLEQCKNATFQISSIA
KKPLKRTPAPPFTTSTLQQEAARKLGFTVSQTMMVAQRLYEAGRITYMRTDSVNLSNLAV
STAKTEIENLYGTEYSKTRKYHTNSKGAQEAHEAIRPTDMSAHGIDGTSQEKRLYDLIWK
RTVASQMADAKIDKTTVSIGILDAEGHESDKLQFVATGEVIAFDGFLKVYRESTDDENET
EDTSHALPAMSEGQMLERRSIVSTERYSMGPSRYTEASLVHKLEELGIGRPSTYAPTIST
IQQREYVQKGDKKGEERIYVVDTLQALKITSKNKKEMVGADKGKLIPTDIGIVVNDFLME
NFPDIMDYNFTAKVEQEFDKISEGKATWNAAMKEFYKRFEPEVEAVMNARSEHKAGERAL
GIDPKTNKPVFVKIGRFGPVVQIGTADDTDKPRFAQIPSDKSMETLTLDDALELFKLPRT
IGQFEETDVVIGAGRFGPYIMHNKKYVSLPKDEDPLTVSLDTAIKLIESKRLQDAQRHLK
QFDEDPKLEVMNGRYGPYIAYDGKNYRIPKAMHEKASELTYEECQDIIKNAPEPKARRGR
K
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaaaacttagttatagtagagagccctgcaaaggcaaagacaatagagaagttc
ttgggcgaagactttaaggttatgtcgtcgtacggacatattcgtgatttgaaaaagaaa
gaattaagtgtggatttagacactttggaagccaattacgaaattccagacgagaagaag
aaggttgtttcagaactcaagaaaaatgctaaagccgctaaaaaagtttggttggcgtcc
gatgaagaccgcgaaggagaagccataagttggcacctttgcgaagttttaggactcgac
gaggaaaaaacgagccgtatcgtgttccacgaaatcacgaaatcagccattcttgctgct
atccagaatccacgtcgattggatatgaaccttgtaaacgcacagcaggcacgccgtgtg
ttagaccgtttggtgggtttccgcctgtctcccgtgttgtggcgcaaggtgaaaccagca
ttgagtgcaggtcgtgtgcagagcgttgccgtaagattgatagtagaacgcgagcgcgaa
attcaggcgtttaagtctgaaccctattacagagtgaatgctatctttgctgcaagcagc
gaagacggcacgaaaaacgaagtgaaagcagaactgaacaagcgttttgccactcacgaa
gaggctttggcgttccttgaacagtgcaagaacgcaacgttccaaatatcttccatcgcc
aagaaaccgctgaaacgaactcctgctcctccgtttacaacatcgacgttgcaacaggaa
gcagcacgcaaattaggctttacggtaagtcagacgatgatggtggcacagcgactgtac
gaagcaggacgcatcacctatatgcgtaccgacagcgtaaacttgtctaatcttgccgtc
agcactgcaaaaaccgaaatagaaaacctttacggaacagaatatagcaagactcgcaag
taccataccaacagcaaaggtgcgcaggaagcccacgaggctattcgtcctaccgatatg
agtgcgcacggaattgatggtacgagtcaggaaaagcgtctttacgaccttatttggaaa
cgcaccgtggcgtctcagatggcagatgccaagattgataaaacgaccgtatccatcggt
attttagacgctgagggacacgagtcggacaagcttcagttcgtagctacaggcgaagtc
attgccttcgatggtttcttgaaagtttatcgcgaatctaccgacgatgaaaacgaaacc
gaagacacatctcacgcactgcctgctatgagcgaaggtcagatgttggagcgacgcagc
attgtttctaccgaacgctattctatggggccaagccgctatacagaagcaagtttggtg
cataagctcgaggaattgggcattggtcgcccatcaacatacgctccaaccatttcaacc
attcagcaacgcgagtatgttcagaagggcgataagaagggcgaagaacgcatatacgtg
gtagacaccttgcaggcgttgaagattacctcaaagaacaagaaggaaatggtgggtgcc
gataagggcaagctcattccaaccgacattggcattgtggtaaacgacttccttatggag
aatttccccgacattatggactacaatttcactgctaaggtggaacaggagttcgataag
atttcggaaggaaaggcaacttggaatgctgcaatgaaagagttttacaagcgtttcgag
cccgaagtggaagccgtaatgaatgcacggtcggaacataaggcaggcgaacgcgcgttg
ggcatcgaccctaagaccaacaaaccggtatttgtaaagattggtcgcttcggtcctgtt
gtgcagattggtactgccgacgacaccgacaagcctcgttttgcgcagattccaagcgat
aagagtatggaaacgcttacactcgacgacgcattggagctgttcaagctgccacgtact
atcggacagtttgaggaaaccgacgttgtgataggcgcaggacgtttcggcccttacata
atgcacaacaaaaagtacgtctcgctgccgaaagacgaagacccgcttacggtttcgctc
gacacagccataaagttgatagagtcaaaacgcctccaagatgcgcagcgacacctgaaa
cagttcgacgaagaccctaagttggaagtgatgaacggtcgttacggcccttacattgca
tacgacggaaagaactatcgcataccaaaggcaatgcacgagaaggcttccgaacttact
tacgaagagtgtcaggacattataaagaacgcacccgaacccaaggcaaggcgcggacgc
aaataa
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