Prevotella intermedia: PIN17_A0965
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Entry
PIN17_A0965 CDS
T02058
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pit
Prevotella intermedia
Pathway
pit03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pit00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PIN17_A0965 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pit03021
]
PIN17_A0965 (rpoB)
03400 DNA repair and recombination proteins [BR:
pit03400
]
PIN17_A0965 (rpoB)
Enzymes [BR:
pit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PIN17_A0965 (rpoB)
Transcription machinery [BR:
pit03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PIN17_A0965 (rpoB)
DNA repair and recombination proteins [BR:
pit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PIN17_A0965 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AFJ08671
LinkDB
All DBs
Position
II:991266..994994
Genome browser
AA seq
1242 aa
AA seq
DB search
MKSFRDFLQLDTPPEERKNDGLYKVFVENFPITDTRNNFVLEFLDYYIDPPRYSISECLE
RGLTYSVPLKAKMKLYCTDPDHEDFGTFIQDVFLGTIPYMTSNGTFVINGAERVVVSQLH
RSPGVFFGQGVHANGTVLYSARIIPFKGSWIEFATDINNVMYAYIDRKKKLPVTTMLRAI
GFESDKDILQIFDLCEEVKVNKKNMKAALGRKLAGNVMKSWNEDFVDEDTGEVVSIERNE
VVVERETEITDENLDIILESGVSSVLLHKDEDVANKYSIIFNTLAKDPSHSEIEAVNYIY
RQLRNADAADDASAREVFQNLFFSDKRYDLGEVGRYRINRKLGLDTDMDVRVLTKDDIIE
IIKYLINLVNSNATVDDIDHLSNRRVRTVGEQLANQFSIGLARMSRTIRERMNVRDNEVF
QPTDLINAKTISSVINSFFGTNPLSQFMDQTNPLAEVTHKRRLSALGPGGLSRERAGFEV
RDVHYTHYGRLCPIESPEGPNIGLISSLCLYAKINDLGFIVTPYRKVTESKVDLDNEHVV
YMTAEEEEDLPVGQGNAPLNPDGTFIRDYVKCRQDADYPVVEPSQVALMDVAPQQIASVS
AGLIPFLEHDDGHRALMGCNMMRQAVPLLHNDAPIVGTGLEKQVCEDSRTMVTAEGDGVI
EYVDATTIRILYDRTDDEEFVSFEPALKEYRISKFRRTNQNMVVDLRPICNKGQRVKKGD
ILTEGYATENGELALGRNLLVAYMPWKGYNYEDAVVISERMVREDVLTSVHVDEYSLEVR
ETKRGVEEFTADIPNVSEEATKDLDENGIIRIGARVEPGDIMIGKISPKGESDPSPEEKL
LRAIFGDKAGDVKDSSLKANPSLSGVVIDKKLFARAIKTRESKRHDKVTLARLDEEQEAK
INDLKDLLVDKLLELTEDKVSQGIKDYSNAEIITKGTKFTMAALKNLDYEGIQSNGWTDD
EHTNLLIQKLIMNFIRKYKQMDAELKRKKFAITIGDELPSGVLQMAKVYIAKKRKIQVGD
KLAGRHGNKGIVSKVVRAEDMPFLEDGRPVDLVLNPMGVPSRMNLGQIFEAILGAAGRNL
GVKFATPIFDGAKLEDLKEWTDKAGLPPMCSTYIYDGETGERFDQPATVGITYFLKLGHM
VEDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWAIEAFGASHVLQEILTIKSDDV
VGRSKAYESIVKGEPMPTPGIPESLNVLLHELRGLGLSIKLD
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtcgttccgcgactttttacagcttgatactccgcctgaggaacgcaagaatgac
ggtttatataaggtcttcgtagagaatttccctatcaccgatacacgcaataatttcgtt
cttgagttcttggattattatatcgatccacctcgctattctatttcagaatgcttggag
cgtggcttgacatatagtgtgcctttgaaggctaagatgaagctctactgtaccgaccca
gaccatgaggattttggaacatttattcaagatgtgttccttggtacaattccttatatg
acaagtaatggtacatttgttatcaatggtgctgaacgtgtggttgtatctcaattgcac
cgttctccgggtgtgttctttggtcaaggtgttcatgcaaatggtacagtgctttacagt
gctcgtattattccattcaagggctcttggattgagtttgcaacggacatcaataatgta
atgtatgcttatattgaccgtaagaagaagttgcctgttacaacgatgcttcgcgcaata
ggatttgaaagcgataaggatattcttcagattttcgacctttgcgaagaagttaaggta
aataagaaaaacatgaaagctgccttgggacgcaagttggctggtaatgttatgaaaagc
tggaacgaggacttcgttgatgaggatacaggtgaagtagtttctattgagcgtaatgaa
gttgtcgtagaacgtgaaacagaaatcactgacgagaatcttgatattattcttgaaagc
ggtgtgtcttctgtgcttttgcataaagatgaagatgtggcaaacaagtactctataatc
ttcaatacgcttgcaaaagaccccagccactctgaaatcgaggcagtaaactatatttac
cgtcagttgcgtaatgctgatgctgctgatgatgcgagcgcaagagaagtattccaaaac
ctgttcttctctgataaacgctacgacctcggtgaagtaggtagatatagaattaataga
aagttaggacttgacaccgatatggacgttcgtgtcttaacgaaagatgatattatcgag
attatcaagtatttgataaatctcgtaaattcgaatgcaacagttgatgatattgaccac
ttgtcaaaccgtcgtgttcgcaccgttggagaacaattagcaaatcagttctcaatcggt
ttggctcgtatgagtcgtactatccgtgaacgtatgaatgttcgcgacaatgaagtgttc
caaccaactgatttgattaatgcaaaaactatttccagcgttatcaactccttctttggt
accaacccattgagtcaatttatggaccaaaccaacccattggcagaagttacgcacaag
cgtcgtctttcagccttaggtcctggtggtctttctcgtgaacgtgcaggctttgaagtt
cgcgacgtccactatacacactatggtcgcttgtgtcctattgagtctcctgaaggtcca
aacattggtttgatttcttcattgtgtctctatgcaaaaattaatgaccttggctttatt
gtaactccttatagaaaggttacagagtcaaaggttgacttagacaacgaacacgttgtt
tatatgactgctgaagaggaagaagatctcccagtaggacagggtaatgccccattgaat
ccagatggtacatttattcgtgactatgtaaagtgtcgccaagatgccgattatccagta
gtagaaccaagtcaagtagctttgatggacgttgctccacagcagattgcttcagtttct
gctggcttaattccattcttggagcacgatgacggtcaccgcgcactgatgggttgtaac
atgatgcgtcaggctgtgccattgcttcataacgatgctcctattgtaggaacaggcttg
gagaagcaggtgtgcgaagattctcgtacgatggtaactgctgaaggagatggcgttatc
gaatatgtggacgcaactacaattcgtattctctacgaccgaacagacgatgaagagttt
gtaagtttcgagccagcgttaaaggagtatcgtatttctaagttccgtcgcaccaaccaa
aatatggtggtagaccttcgtcctatttgtaataagggacagcgtgttaagaaaggcgat
atacttactgaaggttatgcaaccgagaacggtgaattagcacttggacgcaaccttctt
gtagcttatatgccttggaagggctacaactacgaagatgctgttgttatttcagagcga
atggttcgtgaagatgtacttacatctgtgcatgtagacgagtattctctcgaagttcgc
gaaacaaagcgtggtgttgaagagtttacagccgatattcctaatgttagcgaagaggca
acaaaggatctcgatgaaaacggtattatccgtattggtgcacgtgttgagccaggcgat
ataatgattggtaagatttctccaaagggagaaagcgacccatcaccagaagaaaagttg
ctccgtgccatcttcggagacaaggcaggtgatgttaaagactcttctttgaaagccaac
ccttctttgagtggtgttgttattgacaagaaattgtttgcacgtgctatcaagacacgc
gaaagcaagcgtcacgataaagttactttggcacgtcttgatgaagaacaagaggcaaaa
atcaatgatttgaaggacttgttggttgataagctcctcgaattgacagaagacaaggta
tcgcaaggcattaaggattattcaaatgcagagattattaccaagggaacaaagttcact
atggctgctttgaagaaccttgactacgaaggtatccagtcaaacggctggaccgacgat
gagcataccaacctcttgattcagaaacttataatgaactttattcgtaagtacaagcag
atggatgctgaacttaagcgtaaaaagtttgctattaccatcggagacgaactcccatca
ggtgttctccagatggcgaaggtttacattgcgaagaagcgtaagattcaagttggtgat
aaacttgctggtcgccacggtaacaagggtattgtatcaaaggttgtacgtgcagaagat
atgccgttcctcgaagatggtcgccctgtcgatttggtattgaaccctatgggtgtgcct
tctcgtatgaaccttggtcagattttcgaagctatccttggtgcagcaggtcgcaatttg
ggtgttaagtttgctactccgattttcgatggtgccaaacttgaggacttgaaggaatgg
accgacaaggcaggcttgcctccaatgtgctctacttatatctatgatggtgagactgga
gaacgcttcgaccagccagcaacagtgggtattacctacttcttgaagttgggacacatg
gttgaagacaagatgcacgcacgtagcattggtccatactcactcattacgcagcagcca
cttggtggtaaggcacaatttggtggacagcgatttggagaaatggaagtttgggctatc
gaggcattcggtgcttcacacgtactccaagagattttgacaattaagtctgacgatgtt
gtaggtcgttctaaggcatacgagtctattgtaaagggcgagccaatgccaacaccaggc
atccctgagtcgttgaacgtgttgctccacgagcttcgcggtcttggattaagcatcaaa
cttgattaa
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integrated database retrieval system
