Prevotella intermedia: PIN17_A1238
Help
Entry
PIN17_A1238 CDS
T02058
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pit
Prevotella intermedia
Pathway
pit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PIN17_A1238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pit03019
]
PIN17_A1238
03009 Ribosome biogenesis [BR:
pit03009
]
PIN17_A1238
Enzymes [BR:
pit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PIN17_A1238
Messenger RNA biogenesis [BR:
pit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PIN17_A1238
Ribosome biogenesis [BR:
pit03009
]
Prokaryotic type
rRNA helicases
PIN17_A1238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
NadN_nucleosid_C
Cas3-like_C_2
CMS1
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
AFJ09468
LinkDB
All DBs
Position
II:complement(1271790..1273616)
Genome browser
AA seq
608 aa
AA seq
DB search
MPVQEAVIPYLLGNGNDVIALAQTGTGKTAAYGIPVLQKVDPTQKETQALILSPTRELCL
QIADDLSDFSKYIDGLHVAAVYGGASIEMQSRQLRKGAQIIVATPGRLIDLMKRGVAKLD
TVNNVVLDEADEMLNMGFSESINAIFEGVPSDRNTLLFSATMSREIEKIAKSYLHDYKEI
VVGSRNEGAEKVNHIYYMVHAKDKYLALKRIVDYYPSIFAIIFCRTKVETQEIADKLIRD
GYNAEALHGDLSQQQRDLTMQKFRQHNVQFLVATDVAARGLDVDDLTHVINYGLPDDIES
YTHRSGRTGRAGKKGTSISIIHTRERYKVKAIEKIIQKEFVDGTLPAAKDICSKQLYKVM
DQILKVDVNEEEIEPFLKDIYRHFEYIDKEDIIKKIISMTFNRFLEYYANAPEIEKPSGK
RSDREGERGSRSSRGERTRKAPRTPEAGYKRLFINLGKDDGFYPGEVMQFINKNVHGRQA
VGHIDLLGKFSYIEVPEKDANKVMKALNGTTYKKREVRCNDAEEGGHGRGSRSNGERRGK
RNDDETNSRRSNSNRQERSSKPKRNARPQQETPTTGDWRQFFQHDTKLKGEIPDFSEEGW
ARRKPKKK
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgccagttcaggaagcagttatcccttatttgttgggcaacggtaacgacgttatagca
ctcgcacagacgggtacaggtaagaccgcagcatacggaataccagtcttgcagaaagta
gacccaacgcagaaagaaacccaggcacttattctcagtccgacacgcgaactctgtctg
cagattgccgacgacctttccgatttctctaaatacatcgacggacttcacgttgcagca
gtttacggtggtgcatctatcgaaatgcaaagtcgccagcttcgtaagggagcgcaaatc
atcgtggctacccccggtcgtcttatcgacttgatgaaacgcggcgtagctaagctcgac
actgtgaacaacgttgtgctcgacgaagctgacgaaatgctgaatatgggcttctctgaa
agcatcaatgccatattcgagggcgttccgtcagaccgcaacacgctgttgttctctgct
acaatgagccgtgagatagagaagattgccaaaagctatctacacgattacaaggaaata
gtagtgggcagccgtaacgaaggagccgaaaaggtgaaccatatatattatatggtacac
gcaaaggacaagtatttggcactgaaacgcatcgtagactattacccaagcatatttgcg
attatcttctgtcgcacgaaggtggagacacaagagattgccgacaagctgattcgcgac
ggatacaatgcagaagccttgcacggcgacctcagtcagcagcagcgcgacctgacaatg
cagaagttccgccagcacaatgtgcaattcctcgtggctaccgacgttgctgctcgtgga
ttggacgtagacgatttgacccacgtcatcaactacggattgcccgacgacatagaaagc
tacacccaccgaagcggtcgtacaggtcgtgcaggcaagaagggcacgtctatttcgatt
atccacacacgcgaacgctacaaggtaaaggctatcgaaaaaatcattcagaaggaattt
gtagacggtacgctgcctgcggcaaaggatatttgcagcaaacaactctacaaagtaatg
gaccaaattctgaaagtagacgtgaacgaagaggagattgagccattcttaaaggacatt
taccgccatttcgagtatatcgacaaggaagatattataaagaaaatcatcagtatgact
ttcaatcgcttcttggaatactacgccaatgctcccgaaatagaaaaaccatcgggcaaa
cgcagcgaccgagaaggcgaacgcggcagccgcagcagtcgtggcgagcgcacccgaaaa
gccccacgcacccctgaagcaggctacaagcgtttgttcatcaaccttggaaaagacgat
gggttctaccccggcgaagtgatgcagttcataaacaagaacgtacacggtcgccaagca
gtgggacacatcgatttgctgggcaaattctcttacatagaagttcccgagaaagatgcc
aataaggtgatgaaagcccttaatggaaccacctacaaaaagcgtgaagtgcgttgcaat
gatgccgaagaaggcggacacggtcgtggtagtcgcagcaatggcgaacgtcgaggcaag
cgaaacgatgacgaaaccaacagccgccgttctaacagcaaccgtcaggaacgcagcagc
aagccgaagcgcaatgctcgtccacagcaagaaacgcctacaacaggcgattggcgacaa
ttctttcagcacgacaccaagttaaaaggcgagattcccgatttctcagaggaaggttgg
gcaagaagaaaaccaaagaagaagtaa
DBGET
integrated database retrieval system
