KEGG   Prevotella intermedia: PIN17_A1504
Entry
PIN17_A1504       CDS       T02058                                 
Symbol
uvrB
Name
(GenBank) excinuclease ABC, B subunit
  KO
K03702  excinuclease ABC subunit B
Organism
pit  Prevotella intermedia
Pathway
pit03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pit00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    PIN17_A1504 (uvrB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pit03400]
    PIN17_A1504 (uvrB)
DNA repair and recombination proteins [BR:pit03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     PIN17_A1504 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      PIN17_A1504 (uvrB)
SSDB
Motif
Pfam: UvrB_inter UvrB_3rd Helicase_C UvrB ResIII UVR AAA_19 DEAD AAA_30 Kinesin Microtub_bd AAA_5 AAA_7 SWI2_SNF2
Other DBs
NCBI-ProteinID: AFJ08570
LinkDB
Position
II:1558684..1560729
AA seq 681 aa
MDFRLTSKYKPTGDQPEAIKELTEGLERGDKSQVLLGVTGSGKTFTMANVIANVNKPTLI
LSHNKTLAAQLFEEMKGFFPQNAVEYYVSYYDYYQPEAYMPSTDTYIEKDLAINDEIDKL
RLSAVSSLLSGRKDVIVVSSVSCIYGMGGPVAMKDNVIRIKKGQILDRNIFLRQLVNALY
VRNDIDLQRGNFRVKGDTVDIAMAYSDNILRVTWWDDEIDAIEEVDSVSYHRLGTFEEYE
VYPANLFVTSKEQTENAIRQIQDDLTIQIDFFNEIGDSIKAQRIKERVEYDIEMIKELGH
CSGIENYSRYFDGREAGQRPYCLLDFFPEDNLIIIDESHVSVPQISAMYGGDRARKKNLV
EFGFRLPAAFDNRPLRFEEFHSLIKQIIYVSATPANFELEEAEGVVVEQLIRPTGLLDPE
IEVRPSENQIDNLMEEILIRAEKEERILVTTLTKRMAEELTEYLLNHEVRAAYIHSNVAS
LDRIKIINDLRSGIYDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRA
ARNVNGKVIMYADTITESMQKTIDETLRRREKQLKYNELHHITPTQIKRSIKEILPVGDT
SMAPNVAIDKKKSQTYNIPQEGTAMVADPIVMKMTRKQLEKSIQNTTALMKEAAKNLDFL
QAAQYRDEILRLQAELEQKTV
NT seq 2046 nt   +upstreamnt  +downstreamnt
atggactttagactgacatcaaaatacaagcccactggcgaccaaccagaggcaattaag
gaattaacagagggattggaacgtggcgataaaagtcaagttctgttaggcgtaacaggt
tctggcaagactttcacaatggcaaatgtcatcgccaacgtaaacaaacctactttaatt
ctatcgcacaacaaaactttggctgcccagcttttcgaggaaatgaaaggctttttccct
caaaatgcagtagagtactatgtttcgtactacgattattatcagccagaggcttacatg
ccttcaaccgacacctatatagagaaagatttggcaatcaacgatgagattgacaaactc
cgtctttcagcagtttcttcgctattatcgggcagaaaagatgtaattgttgtgtcatcg
gtatcctgtatttatggtatgggcggtcctgtcgccatgaaagacaatgtaataagaata
aagaaagggcaaattctcgaccgcaacatctttttaagacaactcgtaaacgccctatac
gttagaaatgatattgatttgcagcgtggcaacttccgtgtaaagggagatacggttgat
atagcaatggcttacagcgacaatatattaagagttacatggtgggacgatgaaatagat
gcaatagaagaagtggattctgtttcttatcatcgtttaggcacatttgaagaatacgag
gtttaccctgccaatcttttcgttacatcaaaggagcaaaccgaaaatgctatccgacaa
atccaagacgacctgacaatacaaattgatttctttaatgaaataggggatagtattaaa
gctcaacgcattaaagaacgtgtagagtacgatatagaaatgataaaggagttagggcac
tgctcaggaattgagaactattctcgctatttcgatggcagagaagcggggcaacgtcct
tattgtctcttggactttttccccgaagacaaccttattataattgatgagagtcacgta
agtgttcctcaaatctcggctatgtatggtggcgacagggcaagaaagaagaatctcgta
gagtttggtttccgtttacctgcggcgttcgataaccgtccgctaaggtttgaagagttt
catagcctcatcaagcaaattatttatgtatcggcaacccctgcaaactttgaattagaa
gaagctgaaggcgttgtggtagaacaacttatacgcccaacaggcttgctcgaccccgaa
atagaggttcgtccatcagaaaatcaaatcgataacttaatggaagaaatcctgataagg
gcggaaaaagaggaacgtattcttgttacgacactcacgaaacgaatggcagaagaacta
accgagtaccttttaaaccacgaagtgcgggctgcttatatacacagcaatgttgcaagc
ttagatagaataaaaattataaacgacttacgcagcggtatttatgacgttctcgttgga
gtaaaccttttgagagaaggcttagacttgcccgaggtttcgttagtagcaatacttgat
gccgacaaagaaggttttctccgtagccatagaagtcttacacagaccgcaggcagggct
gcacgtaatgtaaatggaaaggttattatgtatgccgacaccattacagaaagtatgcaa
aaaactattgacgaaacattacgcaggcgtgaaaagcaattaaaatataacgaattacac
catatcacgccaactcaaatcaaacgttctataaaagaaatactacctgtgggcgatacc
tctatggcaccaaacgttgcgattgacaagaagaaatcgcaaacatacaacataccgcaa
gaaggaactgcaatggtggctgaccctattgttatgaaaatgacaagaaaacagcttgaa
aagagtattcagaatacaacagcactgatgaaagaagctgctaagaacctcgacttcttg
caagctgcacagtatcgtgatgaaatattgcgcttacaagcagagttggaacaaaaaaca
gtttaa

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