Prevotella intermedia: PIN17_A1673
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Entry
PIN17_A1673 CDS
T02058
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pit
Prevotella intermedia
Pathway
pit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PIN17_A1673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pit03019
]
PIN17_A1673
03400 DNA repair and recombination proteins [BR:
pit03400
]
PIN17_A1673
Enzymes [BR:
pit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PIN17_A1673
Messenger RNA biogenesis [BR:
pit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PIN17_A1673
DNA repair and recombination proteins [BR:
pit03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PIN17_A1673
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Zn_ribbon_11
TrmB
DUF6870
Motif
Other DBs
NCBI-ProteinID:
AFJ08730
LinkDB
All DBs
Position
II:complement(1737392..1739308)
Genome browser
AA seq
638 aa
AA seq
DB search
MTYKEILHKYWGYPDFRGIQSKVIESIGAGKDTLGLMPTGGGKSITFQVPALAKEGVCIV
ITPLISLMKDQVDNLCQRHIKAAAIYSGMSRDEIISTLENCIFGGIKLLYISPERLGSEL
FQAKLKHIKVSFITVDEAHCISQWGYDFRPSYLEIMNIRKLLPDVPVLALTATATPEVVK
DIQFRLGFAEENVFRMSFERKNLSYVLRTTQEKFNEMFHILQSVDGSAIVYCRSRKRTKE
AAEFLLKNGISATWYHAGLENTDKNKRQNAWQANEIRVIVATNAFGMGIDKANVRLVIHL
DPPSSIEAYFQEAGRAGRDGKRSYAILLHTQGNDERNLRKRIKENFPAKEEIRTVYEHLA
YFYQIGVESGRDATFEFPIDKFCIYFHHFPIQVNAALQILTRAGYIDYEPDPDSKARIHF
ILSRDELYRLGEQSNEEEKVISALLRNYSGLFTDYRYIDESYIADVVGLDRNETYHILQN
LSRKRIINFIPRKNIPVIKYLQDRVDSEELVISKTVYEDRKEKFEERIAAMINYIQNDYT
CRSRQLLRYFGEDRSTDCACCDVCLSYKGENKQLKKSLRETILDLLADGKKHHITELKGM
DTNASVTNQDTLRATLEELIAEEYIYMEGSYVYQNTKS
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgacttacaaggaaatccttcataaatattggggctatcccgattttcgaggtattcaa
agcaaagttatagagagcattggtgcaggaaaagacacgttaggactgatgcctacgggt
ggcggaaagtccattacgtttcaagtgcctgcattggcaaaagaaggagtgtgcattgtc
atcactcctttaatttcgttgatgaaagaccaagtagacaatctttgccagcgacacatc
aaggcagcagcaatctactcgggtatgtcgcgcgatgaaattatctcaacgctcgaaaac
tgtatctttggcggtataaagctgctctatatatcgcccgaacgccttggttctgaactg
tttcaagcgaaactaaaacacataaaggtaagcttcatcaccgtagacgaagcccactgc
atcagccaatggggctacgacttccgtccttcctatctcgaaattatgaacatcaggaag
ctgcttcccgatgttccagtgcttgcccttacggcaactgctactcctgaagttgtgaag
gacattcagttccgacttggatttgccgaagagaatgtatttcgaatgagtttcgaacgt
aagaatctttcttacgtcctgcgcacaacacaagagaagttcaacgaaatgtttcatatt
ctgcagtcggtagacggctcggctattgtatattgccgcagcagaaagcgcacaaaggaa
gcagcagagttcttacttaagaatggtatttcagcaacgtggtaccacgcaggattggaa
aacaccgacaagaacaagcgtcagaatgcgtggcaagccaacgaaattcgtgtcattgta
gctactaatgcttttggaatgggtatcgacaaagccaatgttcgtttggtaatacacctc
gacccacccagttccatcgaggcttactttcaagaagcagggcgagcaggcagagatggc
aaaaggtcgtatgccattttgctccacacacaaggcaatgatgaacgcaatttacgaaag
cgaataaaggaaaatttccctgcaaaagaagaaatccgtactgtttacgaacatttggcg
tacttctatcagataggcgtagagagtgggagagatgccactttcgagtttcctatcgac
aaattctgcatctatttccaccattttcctatccaagtcaatgcagccttgcaaatattg
acccgtgcaggctacatcgactacgaaccagaccccgacagcaaggcacgcatacacttc
attctgtcgcgcgacgagctatacagattaggtgaacagagcaacgaagaagaaaaagta
atttcggcattgctgcgcaactattcgggtttgttcacggattatcgctatattgacgaa
agctatatagccgatgtagtgggtttggatagaaacgaaacctaccatatactgcaaaat
ctcagtaggaaacgaattataaacttcattccgcgtaagaatattcccgtcataaagtat
cttcaagaccgtgttgatagcgaagagttggttatttcaaaaactgtctacgaagaccga
aaggaaaagtttgaggaacgcatagcggcgatgataaattacatacaaaacgactatacg
tgtcgcagccgacagcttttgcgctattttggcgaagaccgaagcaccgattgtgcttgc
tgtgatgtttgtctgtcgtataaaggcgagaacaaacaactgaaaaagtcgttgcgtgaa
accatactcgacttgttggcagacggcaagaagcaccatattaccgaactgaaaggaatg
gataccaatgcttctgtaaccaatcaagacacattgcgtgcaactttagaagaacttatt
gccgaagaatacatatatatggaaggcagctacgtttaccaaaacactaaatcgtag
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