Prevotella intermedia: PIN17_A1937
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Entry
PIN17_A1937 CDS
T02058
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pit
Prevotella intermedia
Pathway
pit03030
DNA replication
pit03430
Mismatch repair
pit03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PIN17_A1937
03430 Mismatch repair
PIN17_A1937
03440 Homologous recombination
PIN17_A1937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pit03032
]
PIN17_A1937
03400 DNA repair and recombination proteins [BR:
pit03400
]
PIN17_A1937
Enzymes [BR:
pit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PIN17_A1937
DNA replication proteins [BR:
pit03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PIN17_A1937
DNA repair and recombination proteins [BR:
pit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PIN17_A1937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
T2SSK
Motif
Other DBs
NCBI-ProteinID:
AFJ08572
LinkDB
All DBs
Position
II:complement(2019744..2023460)
Genome browser
AA seq
1238 aa
AA seq
DB search
MEDFVHLHVHTHYSILDGQSKVSYLVDKAVNNGMKGMAITDHGVMFGIKEFSDYCANINK
ARKKNGEEPFKPIFGCEMYVARRRKEDKVKEMHDNSGYHLIVLAKNYQGYKNLIKLVSHA
WVDGYYYRPRTDRADLEKYHEGLIVCTACLAGEVPRNILKGDIDAAREAVEWYQRVFGDD
FYLELQRHEVKDPTLLANREAFPLQQKVNRVLLQFAKEYGIKYVCTNDCHFEDKETAEAH
DHLLCLSTQEDLNSPTRMRYSKQEWFKTREEMNEVFADLPEAMSNTLEILDKVELYSIDN
GPIMPFFPIPESFGTEEKWRQKFSEQQLYDEFTTDENGENQLSPEDGQAVIDRLGGYEKI
YRIKFEADYLAKLAHDGAKQLYGDPIPEEVQKAITFELHVMKTMGFPGYFLIVQDFINAA
RTELDVMVGPGRGSAAGSVVAYCLGITRIDPLKYDLLFERFLNPDRVNLPDIDTDFDDDG
RGRVLQWVMDKYGEENCAHIITYSTMATKNSLKDVARVEGLPLEISNRLCKAIPERLPDG
MKMNLKNAIACTPMLQEAEVSEDARERNTIKYAKMLEGTVRGTGIHACGFIICRNPISEW
VPISTATDPDYPDQKVPVTQYDGHVIETTGLIKMDFLGLKTLSEIKEACKVIKQTTGDII
DIDNIPIDDELTYQLYQRGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNALYRPGPMD
YIPDFIKRKNNPALVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGESDALRKA
MGKKKKAIVDQMKPKFLAQGKANGHDPEVLEKIWGDWEKFASYAFNKSHATCYSWVAYQT
AYLKAHYPAEFMAALMTRRFSQITEITKLMEECKALKISTLGPDVNESQMGFGVNKKGEI
RFGLSAIKGMGTGAAMAIVNEREKNGAYKSIFDFAERIDLSNVNRKAFESLAYSGGFDSF
GLQREEYFGVNSKGVTFLDSLVRYAQLFQQEKAQMQNSLFGGDDAVEIAQPVVPKTDRWP
SIEKLNKERELVGIYLSAHPLDEYSVILNNLCNTHIEEIGRGADMEQLSKREEITFGGII
TAVNERFSQKTGKPFGFVTIEDFEGSGELALFGDDWARWNGLMKENYTIFVTAKCQPRYR
NSNLYELKVQNVEQLYDVKAHRLERFTISVDASSVNDQTVSDLVTLVEQNEGSTQLYIEL
HTAEQSSVTLHCRNKGVNVDRALLDFIANEENMSYKIN
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atggaagatttcgtacatttacacgtgcacacacattattcaatccttgacggccagtct
aaggtgtcgtatctcgttgataaggcagtgaataatggaatgaagggaatggctattacc
gaccacggtgtaatgttcggaataaaagagttttctgattattgtgccaatataaacaaa
gcacgtaaaaagaatggtgaagaaccttttaagcctatctttggttgcgagatgtatgta
gctcggcgacgcaaagaagacaaggtgaaagaaatgcacgacaattctggctaccacctt
atagtattggcaaagaactaccaaggttacaaaaaccttattaagttggtatcacatgcg
tgggtagatggctattattaccgaccgcgtaccgaccgtgccgatttggagaagtatcac
gaaggcttaatcgtatgtacagcttgcttggcgggagaagttccacgtaatatattgaag
ggagatatagatgctgcccgtgaagcagtagagtggtatcagagagttttcggagatgat
ttctatcttgagctgcagcgtcacgaagtgaaagacccaacgctgttagccaatcgtgaa
gctttccctttgcaacagaaggtgaaccgtgtgcttttgcagtttgcaaaggaatacgga
attaagtatgtgtgtaccaacgactgccattttgaagacaaagaaacagcagaagcgcac
gaccacctactctgtctttccacacaagaagacctaaactctcctacacgaatgcgctac
tcaaagcaagagtggttcaagacccgtgaagagatgaacgaagtgtttgccgatttgcca
gaagcaatgagcaatacattggaaatactcgataaggtggagctgtatagcatagacaac
gggcctattatgcctttcttccccattccagaaagtttcggtacagaagaaaaatggcga
cagaagttcagcgaacagcaactttacgatgagtttactaccgatgaaaatggcgaaaat
cagctctctcccgaggacggacaggctgtaatcgaccgcttaggtggctacgaaaagatt
tatcgtattaagttcgaggctgactatttggcgaagttggcacacgatggtgcaaagcaa
ctctatggcgacccaattcccgaagaggttcagaaggcgataacgtttgagttacacgtt
atgaaaacaatgggtttccccggctacttccttatcgtgcaagactttataaacgctgcc
cgaaccgagcttgatgtaatggtgggccctggacgtgggtcggcagcaggttcagtggtg
gcttattgcttgggaataacgcgcatagaccccttgaagtatgacttgctgtttgagcgt
ttccttaatcccgaccgtgtcaatcttcccgatattgataccgacttcgatgatgacgga
cgtggaagggtgctgcaatgggtaatggacaagtatggcgaggaaaactgtgcccacatc
attacctattctactatggcaaccaagaactcgctcaaagacgttgcgcgtgtggaaggc
ttgccattggagatttcaaaccgactttgtaaagccattcccgagcgtctgcccgatggt
atgaagatgaatttaaagaacgccatcgcctgtacaccgatgttgcaagaggcagaagtg
agcgaagacgcgcgggaacgcaacacgattaaatatgcaaagatgttggaaggaacggtg
cgtggaacaggtattcacgcctgcggattcattatttgtcgtaatcctatcagcgaatgg
gtgccaatttctactgcaaccgaccccgactatcccgaccagaaagtacctgttacccaa
tatgatgggcacgttattgaaacaacaggacttataaagatggacttcctcggactgaaa
acactgtccgagataaaggaagcgtgtaaggtaattaagcaaactactggcgatataata
gacatcgacaacataccaattgacgacgaactcacttatcagctttaccaaaggggacaa
accgtaggaacattccagtttgaatcggcgggtatgcagaaatatctgcgcgaactgcac
ccaacggtgtttgaagaccttattgcgatgaatgccctttaccgtccgggaccaatggat
tatatccccgacttcatcaagcgcaagaacaaccctgcgttggtgaagtacgatattcct
tgtatggaaaaatacttgaaggacacgtatggcattacggtctatcaagagcaagtgatg
ttgttaagtcgtcagcttgcaaacttcactcgtggcgagagcgacgccttgcgtaaggca
atgggtaaaaagaagaaagccattgtagaccagatgaaacctaaatttcttgcgcaggga
aaggcaaacggacacgaccccgaagtgttggaaaagatatggggcgactgggaaaagttt
gccagctatgccttcaataagtcgcatgccacttgctattcgtgggtagcttaccagaca
gcttacttgaaagcacactacccagccgagtttatggcagccttaatgacacgccgtttc
agtcaaatcaccgaaattacgaagttgatggaagagtgcaaggctctcaaaatatcaacc
ttgggtcctgatgtaaacgaaagtcagatgggttttggtgtaaataagaaaggtgaaatt
cgtttcggactttctgccattaaaggaatgggaacaggcgcagcgatggcgattgtgaac
gaacgcgagaagaatggtgcttataagagcattttcgacttcgccgaacgtattgaccta
agcaatgtaaaccgcaaagccttcgaaagtttggcttatagtggtggcttcgatagcttc
ggattgcaacgggaagaatatttcggtgttaattcaaagggggtaacgttcctcgattca
ttggttcgctatgcgcagttgttccagcaagagaaggcgcaaatgcaaaattcgctcttc
ggtggcgacgatgcagtcgagatagcacaacctgttgtgcctaaaaccgaccgctggcca
agcatagaaaaactgaacaaagagcgcgaactcgtgggtatttacctttcggcacaccca
ttggacgagtacagcgtgatattgaacaatctgtgcaacacgcatatcgaagaaatcggg
cgaggtgctgatatggagcagctctcgaagcgcgaggaaataactttcggcggaatcatt
accgcagtgaacgagcgtttctcacaaaaaacaggtaaacctttcggctttgttacgata
gaagattttgaaggttcgggcgagctggcgttgtttggcgacgactgggcacgatggaac
ggactgatgaaggaaaactatacaatttttgtaacggcaaagtgtcagcctcgctatcgc
aacagcaatctttacgaactgaaagtgcagaatgtggaacagctttacgatgtgaaggcg
cacaggttagaacgttttacgatttcggtagatgcctcgtctgtgaacgaccaaacggtt
tccgaccttgttacacttgtagaacaaaacgagggaagcacgcaactttacatagaactg
catactgccgaacagtcgtcggtaaccctgcattgtcgcaataagggcgtgaatgtagac
cgtgcgttgcttgactttattgccaacgaagaaaatatgagttataagataaactga
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