Prevotella intermedia: PIN17_A1986
Help
Entry
PIN17_A1986 CDS
T02058
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pit
Prevotella intermedia
Pathway
pit03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PIN17_A1986 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pit03400
]
PIN17_A1986 (mfd)
Enzymes [BR:
pit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PIN17_A1986 (mfd)
DNA repair and recombination proteins [BR:
pit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PIN17_A1986 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
AAA_16
Cas3-like_C_2
UB2H
Zeta_toxin
AAA_25
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFJ08870
LinkDB
All DBs
Position
II:complement(2074133..2077606)
Genome browser
AA seq
1157 aa
AA seq
DB search
MNIQDIQKLYGVLPQGDALMKTMEEKSVRTVFLQGLLASATPMFFASIVKRWQKTMLFVL
NDNDEAGYFYNDLKTIAMPENRQEQTAEVLFFPSSYRRAVKYGQRDAGNEILRTEVLSRL
SVINEAKATASLPLCIVTEPSALAELVVAKHKLDEHTLSVSVGQTMDLTETEKTLRSYGF
QQVDYVYEPGQFAVRGSILDVYSFSSELPYRIDFFGNDVDTIRTFEVETQLSKDKKEKVE
IVPELATLSEEKIPFLQFLPKDSVLVMKDLLYIHDTIERIYNDGFTAQALTEQLEGKTET
EQNELRKQLQANLQLITAQQFTDDALNFKRIEFGANRAKNEESKAIIRFNISPQPLFHKN
FELLTQSLKDYLLQGYKLYILADSEKQTTRLRDIFDSKGADGEAETTSVADNIPFMPVNR
TIHEGFIDNDLKVCFFTDHQIFDRFHKYSLKSDKARQGKMALTMKELQEMEPGDFLVHVD
FGIGKFAGLVRVPAGESYQEMIRLVYQHNDIVDVSIHSLYKISKYRRADSGDAAPRLSVL
GSGAWDRLKEKAKKRIKDIARDLIKLYAKRRHEKGFSFSPDSFMQHELEASFLYEDTPDQ
LKATQDLKHDMESSRPMDRLVCGDVGFGKTEVAVRAAFKAATDGKQVAVLVPTTVLAFQH
YQTFSKRLKDMPVTVDYLSRARTAKQTKQVLADLAEGKIDILVGTHKLIGKSVKWKDIGL
LIIDEEQKFGVSTKEKLRQLKNNIDTLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYP
IQTEIASFSSEVIADAINFEMSRNGQVFFVNDRIANLPELASLIKKYVPDCRVAIGHGQM
KPEELEETIIGFMNHDYDVLLSTTIVENGIDISNANTIIINDAHKFGLSDLHQMRGRVGR
SNKKAFCYLLAPPLAALNPDARRRLEALETFSDLGSGFSLAMQDLDIRGAGNLLGAEQSG
FMEDLGYETYQKILNQAVTELKNDEFQDLYTEEMAEGKELTGDDFIDDCAVESDLEMYFP
DTYVPGSSERMLLYRELDNIENDADLDAYRKRLEDRFGPVPRQGIELMQVVALRRVGKRL
GCEKLILKQSTLQMQFISNPDSAYYKSRAFGKCIDYIGNNPRRCNIKERNGKRSMVVTGV
KSVGDAVFVLREIDKGL
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgaatatacaagacatacagaaactatatggagtgttgccacagggcgatgctttgatg
aaaacaatggaagaaaagtcggttcgcacggtttttcttcaaggattattggcttctgcc
acaccaatgttctttgcttcgatagtgaaacgatggcaaaaaacaatgcttttcgtactg
aacgacaacgacgaagcgggctatttctacaacgatttgaaaacaattgccatgcccgaa
aataggcaggagcagactgctgaggtgttgtttttcccctcttcgtatcgcagggcggtg
aaatatggtcagcgcgatgcaggaaacgagatactgcgtacggaggttctgtcgcgtttg
tcggtcatcaacgaggcaaaagctaccgcttcgttgcctctttgcatcgttaccgagcct
tcggcgttggcagaattggtggttgccaagcacaagttggacgagcataccttgtctgtg
agtgtcggacagacgatggatttaactgaaacagagaagactttgcgctcgtatggcttc
caacaagtagactatgtgtacgagccagggcagtttgccgtgcgtggcagcattctcgat
gtctattccttttcgagcgaactgccttatcgtatcgactttttcggcaacgatgtagat
acgattcgtacttttgaggtggaaacgcagctatcgaaagacaagaaagaaaaggtggag
attgtgccggaattggctacattgagcgaagagaaaatacctttcttgcagtttctgccg
aaagattctgttctcgtaatgaaggatttgctgtatattcacgatactatcgaacgcatt
tataacgatggtttcactgcacaagcactgaccgagcagctcgaaggcaaaacggaaaca
gagcaaaacgagttgagaaagcagttacaggctaatcttcaactcataacggcgcaacag
tttaccgacgatgccttgaacttcaagcgcatagagtttggtgcgaaccgtgcaaagaac
gaggaaagcaaggcgattatacgttttaatatttcgccacaaccactctttcacaagaac
tttgagttgcttacgcagtcattgaaagactatctgctgcaaggatacaaactctatatt
cttgccgacagcgagaaacaaacaacgcgtttgcgcgatatattcgacagtaagggggca
gacggcgaagccgaaacgacctctgtggcagacaatatcccctttatgcccgtgaacaga
accattcacgagggcttcatcgacaacgatttgaaagtttgtttcttcaccgaccaccag
attttcgaccgcttccacaagtacagcctaaagtctgacaaggctcgacagggtaagatg
gcacttacaatgaaagagttgcaagagatggaaccaggcgatttccttgtccacgtagac
tttggcattggtaagtttgcaggtttggtgcgtgttccggcaggcgaatcctatcaggaa
atgatacgcttggtgtatcagcacaacgatattgtggacgtttctatccattcgctctac
aaaatcagcaaatatcgccgtgccgatagtggcgatgctgcaccacgtctttctgttctt
ggctcgggagcgtgggacagactcaaggaaaaggcgaagaaacgcatcaaggatattgct
cgcgacttgataaagctctatgcgaaacgacgccacgaaaagggcttttccttctcgccc
gactcgtttatgcagcacgaattagaggcttcgttcctctacgaagatacgcccgaccag
ctgaaagcgacgcaagacctgaaacacgatatggaaagcagccgcccaatggacaggttg
gtgtgcggcgatgttggctttggcaagaccgaagtagcggtgcgggcagctttcaaggca
gctaccgacggaaaacaggtggctgtgctcgttccaactacggtgcttgcattccagcat
taccaaactttcagtaagcgactgaaggatatgcccgttacggtagactacctttcgcga
gcaagaacagccaaacaaaccaagcaagtattggcagacttggccgaaggaaagattgat
attctcgtgggaacgcataaactgataggcaagagcgtgaaatggaaggatattggcttg
ctgattatcgacgaagaacagaagtttggcgtatcgactaaggagaaactgcgccaactg
aaaaacaatatcgacacgctaacaatgtcggcaacgcccattcctcgcactttgcagttc
tcgttgatgggcgcaagggatatgagcattatgcgaacgccaccgcccaaccgctatcca
attcagacggaaatagcttctttctcgtcagaagtaatcgccgatgcgataaactttgag
atgagccgcaacggacaagtgtttttcgtgaacgaccgtatagcaaacttgcccgaattg
gcaagtcttatcaaaaaatacgtacccgattgccgtgtagcgattgggcacggacaaatg
aaacccgaagagttggaagaaaccatcattggttttatgaaccacgactacgacgtgctg
ctttcaacaaccatcgttgaaaatggtatagacatttccaacgccaacaccattataata
aacgatgcgcataagttcggactttccgacctccaccaaatgcgtgggcgtgtgggacgt
tccaacaagaaagctttctgctacttgcttgcaccgccattggcagccctgaaccccgat
gcgcgccgtcgtttggaggctttggaaacattctccgacctcggcagtggcttcagtctg
gcgatgcaagacctcgatattcgtggcgcaggcaatcttcttggggctgaacaaagtggg
tttatggaagatttaggctacgaaacctatcagaagatattgaaccaagcagtaaccgaa
ctcaagaacgacgagttccaagacctttatacggaggaaatggcagagggaaaagaactt
acgggcgatgacttcattgacgattgtgccgtagaaagcgacctcgaaatgtatttcccc
gacacgtatgtgcctggaagttcggagcgaatgttgctctatcgcgaactcgataacatt
gaaaacgatgccgacctcgatgcttaccgcaaacgattggaagaccgtttcggtcctgtt
ccacgtcagggaatcgagctgatgcaggttgttgcactccgccgagtgggcaaacgtctt
ggctgcgagaagctgatactgaagcaaagcaccctccaaatgcagttcatatcaaatccc
gacagtgcctattataagagtcgggcgttcggaaagtgcatcgactacatcggcaacaat
ccccgccgttgcaacatcaaggagcgaaacggcaagcgttcaatggtagttacaggcgta
aagtcggttggcgacgccgttttcgtactgcgtgagattgacaaaggactataa
DBGET
integrated database retrieval system
