Polynucleobacter ibericus: AOC20_00275
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Entry
AOC20_00275 CDS
T09789
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
piu
Polynucleobacter ibericus
Pathway
piu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
piu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AOC20_00275 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
piu03021
]
AOC20_00275 (rpoC)
03400 DNA repair and recombination proteins [BR:
piu03400
]
AOC20_00275 (rpoC)
Enzymes [BR:
piu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AOC20_00275 (rpoC)
Transcription machinery [BR:
piu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AOC20_00275 (rpoC)
DNA repair and recombination proteins [BR:
piu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AOC20_00275 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QWE08699
LinkDB
All DBs
Position
48370..52632
Genome browser
AA seq
1420 aa
AA seq
DB search
MKALLDLFKQTQGEEQFDVIKIGLASPEKIRSWSFGEVRKPETINYRTFKPERDGLFCAK
IFGPTKDYECLCGKYKRLKFRGVICEKCGVEVTLAKVRRERMGHIELAAPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVVDPGMTPEGAMKRGQIMSEDEYIAKTEEYGDGAF
TAIMGAEGIRDLLRSIDIDREVETIRADLKATGSDAKIKKYAKRLKVLEAFQTSGIKPDW
MIMEVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPEIIVRNEK
RMLQEAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKSGRFRQNLLGKRVDYSGRSVIV
VGPTLKLHQCGLPKLMALELFKPFIFNKLETLGIATTIKAAKKEVESQTPIVWDILEEVI
REHPIMLNRAPTLHRLGIQAFEPMLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEA
QMEARTLMLASNNVLFPANGEPSIVPSQDVVLGLYYATRDKINGKGEGMVFANITEVVRA
YEAGQVELASRVAVRITEYEIVDKKAEGDARFAEKTKIYQTSVGRAILSEILPKGMSFEE
INKPLKKKEISRLINTSFRKCGLRETVIFADRLLQSGFRLATNAGISVAIDDMLIPTSKE
RIITEASAKVKEYDKQFMSGLVTNQERYNNVVDIWGAAGDQVGKAMMDELSHVDVLDRNG
KTVRQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQ
YFISTHGARKGLADTALKTANSGYLTRRLCDVTQDLVVIEEDCGATTGVTMKALVEGGEI
IEALRDRILGRVCIGDIVHPDTQEVIVPNDTLLDEDHVDQIVALGIDEVKVRTVLSCLTR
FGLCAKCYGRDLGRGGLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRALVASNIE
AKSNGALKFSGTMRVVKNAKGEQIVISRSGEALIVDENGRERERHKVPYGATLLLKEDAA
VKAGASLATWDPLTRPIISEYAGIARFDNVEEGVTVAKQVDEVTGLSTLVVIDGKRRSAA
SKGVRPMINLVDEKGNEVMIAGTDHPVNIGLQVGALITVKDGQKVEVGEVLARIPIESQK
TRDITGGLPRVAELFEARSPKDAAVLAKVTGTVSFGKETKGKQRLVITDMDGEANEFLIP
KEKQVLVHDGQVVNKGEMIVEGPADPHDILTLKGIEELAIYIVDEVQDVYRLQGVKINDK
HIEVIVRQMLRRVQVTDPGDTSFITGEQVERSKLYDANDAVIAQGKHPAQFDNVLLGITK
ASLSTDSFISAASFQETTRVLTEAAIMGKTDTLRGLKENVIIGRLIPAGTGLSYRRARKV
REQFERDRAQMIAAEEEAMANMPVEIEAEVVAPAGEADPS
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattgctcgatttatttaagcaaacgcagggcgaagagcagtttgatgtcatc
aaaattggtctcgcatctcctgagaaaattcgctcatggtcttttggtgaagtacgcaaa
ccagaaaccatcaactaccggacttttaagcccgagcgtgatggtttgttctgcgccaag
atttttggaccaaccaaagactacgagtgcttatgcggcaagtacaagcgcttaaagttc
cgtggcgtaatctgcgagaagtgcggcgttgaagttactctcgctaaggttcgtcgtgag
cgcatgggccacattgaattggcagcccctgtagcgcacatttggttcttgaagtccctg
ccatcccgtttgggcatggttctcgatatgacattgcgtgatatcgagcgcgttctctac
tttgaagcatatgtagtggttgatcctggcatgactcctgaaggcgcaatgaagcgtggt
cagatcatgtctgaagacgagtacattgctaagactgaagagtatggtgacggtgcattt
accgccatcatgggcgctgaaggtattcgtgatctcttgcgttcgattgacatcgatcgt
gaagttgagaccattcgtgctgacttgaaagctactggtagcgatgccaagatcaagaaa
tacgctaagcgcttaaaagtgctcgaggcgttccagacttcaggtattaagcctgactgg
atgatcatggaagtattgccggtattgccacctgaattgcgcccattggtgccattggat
ggcggtcgctttgctacctccgatttgaacgacctttatcgtcgcgtgattaaccgtaac
aaccgtttaaagcgtttgttagagttgcgcgcaccagagatcatcgttcgcaacgaaaaa
cgtatgttgcaagaagcggttgactcattgctcgacaacggtcgtcgcggtaaggctatg
actggcgctaacaagcgtcctctcaagtccttagctgagatgattaaaggtaagagcggt
cgtttccgtcaaaacttgttgggtaaacgtgttgactactctggtcgttcagtcatcgtg
gttggccctacattgaaattgcatcagtgcggcttaccaaaattgatggctttggaatta
ttcaagccattcatttttaacaagcttgagactttgggaattgcaaccactatcaaggct
gcgaagaaagaggttgaaagccagactccaatcgtttgggacattctcgaagaagtgatt
cgtgaacatccaatcatgttgaaccgtgcgcctacattgcaccgtctcggtattcaggcc
ttcgagccaatgctgattgaaggcaaagcaatccaattgcacccattagtctgcgcggca
tttaacgccgactttgacggtgaccaaatggcggttcacgttcctttgtcgctcgaagcg
caaatggaagcacgtacattgatgttggcttcgaacaacgtattgttcccagctaacggc
gaaccatcaatcgttccttcacaggacgtggtgttgggtctgtactacgctacacgtgac
aagatcaacggtaagggcgaaggcatggttttcgccaacattactgaagtagtacgtgca
tacgaagcaggtcaagttgaattggcttctcgtgttgctgtgcgtattactgagtatgag
atcgtggataagaaggcagaaggcgatgcgcgttttgctgagaagaccaagatctatcaa
acatcagttggccgtgcaatcttgtctgagattttgcctaaaggtatgtctttcgaggaa
atcaacaagcctttaaagaaaaaagaaatctcacgtttgatcaacacatcattccgtaag
tgcggtttgcgtgaaacagtcatttttgctgaccgtctcttgcagtctggtttccgtttg
gcaaccaatgctggtatctctgttgcgatcgacgatatgttgatcccaacatccaaagag
cgcatcatcactgaggcttctgccaaggttaaagaatatgacaagcagttcatgtcaggt
ctcgtaaccaatcaagagcgttataacaacgtggttgatatttggggtgccgcaggcgac
caagttggtaaggcgatgatggatgagttgtcacacgttgacgtactcgaccgcaacggt
aagactgttcgtcaagaatcctttaactccatctacatgatggcggattctggtgcgcgt
ggatctgcagcgcagattcgtcagttagctggtatgcgtggtttgatggctaagcctgat
ggctccatcattgaaaccccaattactgcgaacttccgtgaaggcttgaacgtgttgcag
tacttcatctcaacccacggtgctcgtaaaggtctggctgatacagcattgaagacagcg
aactctggttacttgacacgtcgtttgtgcgacgttactcaagatctcgtggtgatcgaa
gaggattgcggcgcgactactggcgtaacgatgaaggcgcttgttgaaggcggcgagatt
atcgaagcattacgtgaccgtattttgggtcgtgtatgtatcggtgacatcgttcaccct
gacacacaagaagtgattgttcctaacgatacattgcttgatgaagatcacgttgatcaa
atcgttgcattaggcatcgacgaagttaaagttcgcacagtattgtcttgcttaactcgc
tttggcttgtgcgctaagtgctacggacgtgatctaggtcgcggtggtttggttaacgtt
ggtgaggcagttggtgttatcgctgctcagtcgatcggtgagccaggcacacagttgact
atgcgtaccttccacatcggtggtgcagcgtcacgcgccttggttgcaagcaatattgaa
gccaaatctaacggtgctttgaagttctccggcacgatgcgtgttgtgaagaacgcgaag
ggtgaacagattgtgatttcacgttctggcgaagccttgatcgttgatgagaatggtcgc
gagcgcgagcgtcataaagttccttacggcgcaactctcttgttgaaagaagatgcggct
gttaaggctggcgcaagcttagcaacttgggatccattaacacgtccgattatttctgag
tacgctggtatcgctcgcttcgacaacgtcgaagaaggtgtaactgttgctaagcaggtt
gacgaagttaccggtctttccactttggtggtgattgacggtaagcgtcgttcagcagca
agcaaaggcgttcgcccaatgatcaacttggttgatgaaaagggcaatgaagtcatgatc
gctggtactgatcatccagtaaacatcggcctccaagtgggcgcattgattactgttaaa
gatggtcagaaggttgaagtcggtgaagtattggcacgtattccaatcgaatcacagaag
actcgcgacattaccggtggtttgccacgcgttgcagaattgttcgaagcacgttcacca
aaagatgcagctgtattggcgaaagttactggaacagtttccttcggtaaagaaaccaaa
ggtaaacaacgtttggtgattaccgatatggacggtgaagccaatgaattcttgattcct
aaagagaaacaagttctcgttcacgacggtcaagttgtgaacaagggcgagatgattgtg
gaaggccctgctgatccacacgacatcttgactctcaaaggtatcgaagagttggcaatc
tacatcgttgacgaagttcaagacgtttaccgtctccagggtgtgaagatcaatgacaag
cacattgaagttatcgtgcgtcagatgttgcgtcgtgttcaggtaactgatccaggcgac
acatcattcatcactggtgagcaagttgagcgttctaagttgtatgacgctaacgatgca
gtgatcgcccaaggtaagcacccagctcagttcgataacgtgttgctaggtattactaag
gcatccttgtcgaccgacagcttcatttcagcggcttctttccaagaaaccacccgtgta
ttgaccgaagccgcaattatgggcaagaccgatacactccgtggcctcaaggaaaacgtc
attattggccgtctgatccctgctggtaccggcttgtcttatcgccgtgcacgcaaggtc
agagagcaattcgagcgtgatcgcgctcaaatgattgccgccgaagaggaagcaatggcc
aatatgcctgtagaaatcgaggctgaagtcgttgctcctgctggggaggctgatccaagc
taa
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integrated database retrieval system
