Polynucleobacter ibericus: AOC20_02520
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Entry
AOC20_02520 CDS
T09789
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
piu
Polynucleobacter ibericus
Pathway
piu03410
Base excision repair
piu03430
Mismatch repair
piu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
piu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AOC20_02520 (recJ)
03430 Mismatch repair
AOC20_02520 (recJ)
03440 Homologous recombination
AOC20_02520 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
piu03400
]
AOC20_02520 (recJ)
DNA repair and recombination proteins [BR:
piu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AOC20_02520 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AOC20_02520 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AOC20_02520 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
QWE09107
LinkDB
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Position
complement(465941..467701)
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AA seq
586 aa
AA seq
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MSLFSQRPFSERTATWLAQSGLHPLLARLYAARGLQSPEELSLDLKQLLSPVELKNCIAT
ASLLADILEKKEPMLIVADYDCDGATACAVGLRGLRMLGGPETPIQFLVPNRFTMGYGLT
PEVVELAAQQNPKPKYLITVDNGIASEAGVDRAKELGMEVIVTDHHLPGDHLPKALAIVN
PNQPGCTFPSKALAGVGVMFYLLVALRAELRKRGKFTNETQPKVENLLDLVALGTVADVA
QLDRNNRVLVSNGLKRIRAGISQPGMQALFQAATRDPRKANTFDLGFAIGPRLNAAGRLA
DMTLGIRLLLTDNADEAINLAHELDRINRERRVIETGMQETALSHLAEDQLDGTMAERTS
ICLWNPEWHQGVVGIVASRLKERFNRPAIVFAPADGSTGEELRGSGRSLTGFHLRDALDL
VSKREPGLILKFGGHAMAAGLTIRKSDFEKFDACFQEVASSLLTDELLERRHAHDGVLEL
SEFTPEIGDLLAEEIWGQGFPQPVFYGEFEITQQSLMKEKHLRLMVRPIGAAELKAGNKP
LTAVWFNHTQSLPAKAKLAYRLVTDRYQGQARVQLMIEAHDEAASA
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgagtcttttttctcaacgccctttttccgagcgcactgctacttggttagcacaaagt
ggtttacatccgctgttggcgagactgtatgctgccaggggtttgcaatcaccagaagaa
ctctcacttgatctaaagcagctactctcaccagtcgagctcaagaattgcatcgctacc
gcttctttgctagccgatatccttgaaaaaaaagagccgatgctcatcgttgctgactac
gactgcgatggtgctactgcttgtgccgttggcctgcgcggcctacgcatgctgggtggg
ccggagaccccgattcagtttctagtcccaaatcgtttcacgatgggctacggcctgacc
cctgaagttgtggaattggctgcacagcaaaatcccaaaccaaaatatttgattactgtc
gataacggtattgctagtgaagccggtgttgaccgtgccaaagaactaggtatggaagtc
atcgtaactgaccaccatcttcctggagatcatttacccaaagctctggcaatcgttaat
cccaatcaaccaggttgcactttcccgagtaaagcactcgccggtgttggcgtcatgttt
tatcttctagtcgcattacgtgctgaactacgtaagcgcggaaaatttacgaatgagacg
cagccgaaagtagagaaccttctagacctcgtcgctttgggtacagttgctgacgttgct
caactggatcgcaacaatcgagtattggtttcaaatggcttaaagcggattcgtgcggga
atatctcaacccgggatgcaagccctctttcaggcggcaacacgtgatccacgcaaggcc
aatacctttgatcttgggtttgctatcggccccagactcaatgctgctggacgtctagcg
gatatgaccttaggcattcgtctactcctgaccgataacgccgatgaagcaatcaacctt
gcgcatgagctcgatcgtattaatcgtgagcgccgcgtgattgaaacgggtatgcaagaa
accgccctctcacatcttgctgaagaccagcttgatggcaccatggctgagcgcactagc
atttgtttatggaatccagagtggcatcaaggtgtagtgggtattgttgcctcacgtcta
aaggaacgctttaatcgtccagcaattgtgtttgctcctgccgatggcagcaccggcgaa
gaattgcgtggctccggtcgctcgctcaccggctttcatttaagagatgctttagatctg
gtatccaaacgtgaacctgggctcatcttaaagtttggtggtcatgcaatggctgcaggc
ttaaccattcgtaaaagtgattttgaaaagtttgacgcctgctttcaggaagtagcgagt
agcttgctaaccgacgaattgctagagcgtcgccatgctcatgatggagtattggagctt
tcagaatttacccctgaaattggcgacctcctcgccgaagagatctggggccaaggcttt
cctcagcctgttttttatggggaatttgagattacccagcaaagccttatgaaagaaaag
catttgcgcctgatggtgcgccctattggggcagcagagctcaaggcaggcaataaacca
ctcactgccgtttggtttaaccacacccaaagcttgccagccaaagcaaaattggcctac
cgtctagtcactgaccgctaccaaggccaagcccgtgtacaactgatgattgaagcccat
gatgaggccgccagcgcctaa
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