Polynucleobacter ibericus: AOC20_03330
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Entry
AOC20_03330 CDS
T09789
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
piu
Polynucleobacter ibericus
Brite
KEGG Orthology (KO) [BR:
piu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
piu03009
]
AOC20_03330 (rlmD)
Enzymes [BR:
piu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
AOC20_03330 (rlmD)
Ribosome biogenesis [BR:
piu03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
AOC20_03330 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRM5-TYW2_MTfase
Methyltransf_25
Methyltransf_31
RrnaAD
Methyltransf_15
PCMT
Cons_hypoth95
Methyltransf_11
TRAM
MTS
Methyltransf_23
Methyltransf_32
N6_N4_Mtase
DOT1
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
QWE09256
LinkDB
All DBs
Position
626518..627945
Genome browser
AA seq
475 aa
AA seq
DB search
MRRGDKPVNIEVTEPIKVEALDLDAQGIARLIPNEEETAQGQSGKVIFIKGALPTELVTY
TITSEKARFSKAKVRNILKPAVFRAEPKCKAFGVCGGCTMQHLDIRAQVAMKQRVLEDDL
QHIAKVKPEEILRPMGGPTWEYRHRARLSAVNRSIKKGTVLIGFHEGKSGYVADMLACEI
LPKHVSDLLPEMRKLVMGLSIVDRMPQIEIAVGEPEDALSDDPKKSKPVTALVFRNLKPL
TAEDEQLLRAFADQHQVWIWLQPKGIETVAPFYPETGKLCYRLPEFEIEMPFKPADFTQV
NHMMNRALVSRAIRLLEVKPTDRVLDLFCGIGNFTLPLARKAKAVLGIEGLESLTTRAKA
NAEHNGLVDKVSFMQSDLFLVTTETIASWGKAERWLMDPPREGAMEICKALADLHTGQSE
LLPERIVYVSCNPKTLARDVEILCHQAGYRLSSAGIINMFPHTSHVESMTVFDRN
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgcgtagaggcgataagccagtcaatattgaagtgactgagccaattaaagtggaggca
ctcgatttagatgcccagggaattgcgcgtctcattcccaatgaggaagagactgcccag
ggccagagcggcaaggtgattttcattaaaggtgcattgccaaccgagctggtgacttac
accatcaccagtgagaaggcccgcttcagtaaggccaaagtacgtaatatcctcaagcct
gcggtatttagggctgagcccaaatgtaaagcctttggcgtatgtggcggttgcactatg
cagcatttagacatacgtgctcaagtagcaatgaagcagcgcgtactggaagatgactta
caacatatcgctaaagtaaaaccagaagagatcttacgtccaatgggcggccctacctgg
gaatatcgtcatcgtgcccgtttaagtgcagttaaccgctccattaaaaaaggcacggta
ctgataggctttcatgaaggcaagagtggttatgtagcagatatgttggcgtgcgagatt
ttacctaagcatgtatctgatttattgccagagatgcgaaagttagtcatgggtttgtcc
attgtggatcgtatgccccagattgaaattgcggttggcgagccagaggatgcgctatcg
gatgaccctaaaaaatcgaagccagtaaccgctttggtgtttcgtaatttgaagccttta
acggcggaagatgagcagctactgcgagcctttgctgatcagcatcaggtctggatttgg
ctccaacctaagggcattgagacggtagcccctttttatccagagacgggcaagctttgt
taccgcctgcctgagtttgaaatcgaaatgccattcaaacctgcagacttcacccaggtg
aatcacatgatgaatcgcgcattggtgagtagggcgattcggttgctagaagtaaaacct
acggatcgagtgcttgatttattttgcggcattggaaatttcacattacctcttgccaga
aaagcaaaagcagttttgggtattgaaggtctcgagagtttgacgacacgtgcaaaagca
aacgcagaacataatggactcgttgataaagtcagctttatgcaaagcgatttattttta
gtcactacagagacaattgcttcgtggggtaaagcagagcgttggctaatggatccgccg
cgtgaaggcgcaatggagatttgtaaggcgcttgctgatctgcatacagggcaaagtgaa
ttgttgccagagcgcattgtgtatgtctcctgtaatcccaaaactttagccagggatgtc
gagatcttgtgccatcaggcaggctaccgattgagtagtgcggggattattaatatgttc
ccgcatacctcccacgtggagtctatgaccgtttttgaccgtaactaa
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