Polynucleobacter ibericus: AOC20_03490
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Entry
AOC20_03490 CDS
T09789
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
piu
Polynucleobacter ibericus
Brite
KEGG Orthology (KO) [BR:
piu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
piu03019
]
AOC20_03490 (hrpA)
Enzymes [BR:
piu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AOC20_03490 (hrpA)
Messenger RNA biogenesis [BR:
piu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AOC20_03490 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
Helicase_C
HA2_C
AAA_30
AAA_19
AAA_22
NACHT
HA2_N
nSTAND3
T2SSE
AAA_25
SRP54
AAA_11
PhoH
AAA_23
ResIII
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QWE09596
LinkDB
All DBs
Position
660096..664103
Genome browser
AA seq
1335 aa
AA seq
DB search
MPASNTSRRLEIRFPEELPVSGQRQLIKDALQSHQVVIVCGETGSGKTTQLPKICLDLGR
GTINGGKLIGHTQPRRIAATATAKRIAQELGSPIGQDVGYQVRFADKTSNTASIKLMTDG
ILLAETQRDPQLRAYDTLIIDEAHERSLNIDFLLGYLRQLLPKRPDLKLIITSATIDAQR
FAEHFALNGKVAPVIEVSGRLFPVEQRYAPLEPDAKPDGKKESKTAKEIPDAVTEEISSL
WREGASGAGDVLVFLPGEREIRDCAEALRKDHVLQQRFHPEILSLFARQSVAEQERVFSP
GNGRRIILTTNVAETSLTVPNIRYVIDSGLARVKRYSYRNKVEQLQIESISQAAANQRAG
RCGRISDGICVRLYSEQDYQGRPKFTDPEILRSSLAAVLLRMSSLRLPKIQHFPFIDKPL
GRAIADGVQLLDELGAIEFDESDPVDARENGKDVNNSFKLTATGRQLADLPLDPRIGRML
LAAKEHNALKEVIIIASALATQDPRDRPMDQAAAADQAHLQFADERSEFLSFVKLWNWYQ
DALQHKHSNRQLENLCKSKFLSPRRLREWRDVHGQLHTMLGEKGWKENGLPATYEQVHLS
LLTGLLGYVAKKEEDEKTQDRNSKTGGYVGARGIRPFIWPGSTIGKKAGAWILAGELQET
NRMYARTIAKIEPQWVERVAAHRLIKSLSDPFWDNRQGEVMAFERGTLYGLPIYHGRRVR
YEPHNPEEARELFIGQALVQEEMFGRMDTPALQRETETDAKKKYPNLFGFFWHNRRLIKE
IEALEHRSRRPDVLVDDELLFAFYESRIPKAVCSRESLKAWLDKDKELDSQLRLEKADLM
RHEAAGITVDRYPKTMLVGGARLSLTYHFEPGSPKDGVTLVVPLTQLNQVDGRRCEWLVP
GMCEEKTLLLLKSLPQKLRRHCVPLPDYAKSFLERKLEEKQFGVGDFLDSLISDIRKERG
LEIKRTDFRPEALPLHSSMNFRLIDEHGRQLEVERNLTRLRSEYGQTARNAFQAIAQETA
QVELGVEPPVGASKPIATSADATRKVEQGGYRSWEFGELPETLEIQKGNKTLFGYPALVD
RIDYCDLEVFDDLEEARKQHALGLRRLFALSNKDTLKALQKQLPGIRELGLLFINVGSVD
GLIDQILNLALERAFMGETLPVNAEQFTERLQAGKPRLALIAQEISRHALNALQAHADLQ
KKTASAKAVSPTAYADIQTQIQGLIFPKFVAEIPYAQLVHVPRYLKGVAMRIDKLRSNPS
RDAQCQKDWESVARPWQKLMQGNKGAASYAMAEDQALTDFRWQLEELRVALYAQELKTPT
PMSLKRLEKVLASLR
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgcttccaacacctcacgccggctagaaattcgctttccagaggaattgccggtc
tcgggtcagcgtcagctaatcaaggatgccctgcaaagccatcaggtagtgattgtttgt
ggtgagacgggttcgggtaagacaacgcagctgccgaagatttgcttagatcttggtcgc
ggcacaataaacggcggcaagctcattggccatactcagcctcgccgaatcgcagcaacc
gccacagccaagagaatcgcccaagagttgggctcacccataggtcaggatgtgggttac
caagtccgctttgcagataagactagcaatacggcttccattaagttgatgacggacggt
atcttgctagccgagacgcagcgcgatccccaactacgcgcctatgacacgctcatcatc
gatgaggctcatgagcgtagtctgaacattgatttcttattggggtacttgcgccaatta
cttcctaagcgacccgacctcaaactcatcattacttcagcaaccattgatgctcagcgc
ttcgctgaacactttgcgcttaatggcaaagtagctccagtgattgaagttagcggtcga
ctctttccggtggagcagcgttatgctcctctcgagccagatgcaaagccggatggtaaa
aaagaatctaagaccgcaaaagagattccagacgcggtgactgaagagatttccagcttg
tggcgcgagggcgcatctggtgctggagatgttttagtgtttttgccaggtgagcgagag
atacgcgattgtgctgaagccttgcgtaaggaccatgtcttgcagcagcgttttcatccg
gagattctgagtctctttgcgcgccaatccgttgctgagcaagagagggtcttcagtcca
ggcaatgggcgacgcatcatcttgacaaccaacgttgcagagacctcattaactgtcccc
aatattcgctatgtcatcgatagtggcttggcgagagtcaagcgctattcctatcgcaat
aaggtagagcaactacagattgagtccatctcccaggcggctgccaaccaaagggcgggg
cgctgcggtcgtatatcggatggcatttgtgtgcgcctctatagcgaacaagattatcaa
ggccgccccaagttcaccgatcctgagatattgcgcagttctttagctgcagtgcttcta
cggatgagctccttgcgcttgcctaagattcagcactttccgtttattgataaaccacta
ggaagggcaatcgctgatggcgtgcaacttctggacgagttgggcgctattgaatttgat
gagtcagaccccgttgatgctagggagaatggcaaggatgtcaataacagtttcaagctg
actgccactggcaggcaattggctgacttaccactggatccccggattggcagaatgctc
ttggctgcgaaagagcataacgccttaaaagaagtcatcattattgcttcggcgttggct
acgcaggatccacgagatcgcccgatggatcaggctgctgctgctgatcaagcgcatttg
cagtttgcggatgagcgctcggagttccttagcttcgttaaattgtggaattggtatcaa
gatgctttacagcacaagcacagcaatcgtcagctagagaatctgtgtaaaagtaaattt
ctttcgccgcgtcgcttgcgtgagtggcgtgatgtacatggtcaactgcacacaatgctt
ggtgaaaagggctggaaagaaaatggtttacctgcaacctacgagcaagttcacctctct
ttattaacgggcttattaggttatgtagccaagaaagaggaggatgaaaaaactcaagac
cgcaacagtaagacaggcggttacgttggggcgcgcggtattcgcccattcatttggccc
ggctccacgattggtaagaaggcgggcgcttggattctggcaggtgaactgcaagaaacc
aatcgcatgtatgccagaacgattgccaagattgaacctcaatgggtagagcgagttgca
gctcatcggctaatcaaatcgctgagtgatccattctgggataaccgtcagggtgaggta
atggcttttgagcggggtactttgtatggcttaccgatctaccatggacgccgggtgcgt
tacgagcctcacaatcccgaggaagcaagagagttatttataggccaggccttagttcaa
gaggaaatgtttggtcggatggatacgccagcgttgcagcgcgaaaccgaaaccgatgcc
aagaagaaatatcccaatctctttggattcttctggcacaaccgtcgactgattaaagaa
attgaagcccttgaacatcgttcacgtcgaccagacgtattagtagatgacgaattatta
tttgctttttatgaatcacgcattccaaaagcggtatgtagtcgagaaagcctgaaagca
tggttagacaaagacaaagagctcgatagtcagcttcgcttagaaaaagcagacctcatg
cgtcatgaggcagctggtatcacggttgatcgttacccaaaaacgatgttggtcggcggt
gcacggcttagtctgacctatcactttgaaccaggtagtcctaaagatggtgtaactctg
gtagtgccgctgactcaactcaatcaagttgatgggcgccgttgtgaatggctagtacct
ggtatgtgtgaagagaagacgcttctgctgctgaagtcattgccgcagaaactgcgacgt
cactgtgttcctctgcccgattatgcaaagtcttttctagagcgcaagttagaagaaaag
caatttggcgtgggcgacttcttggacagtctgatcagtgatatccgtaaagagcgcggt
cttgagattaagcgtacggactttagaccagaagcattaccgctacattcttcaatgaac
tttcgcttgattgatgaacatggacgtcagttggaagttgagcgcaacttaacgcgttta
cgttctgaatatggacagactgcccgtaatgcattccaggcaattgctcaagagacggct
caagtcgagttaggtgttgagccaccagtaggtgcatcaaagcctatcgccacttctgca
gatgccacccgaaaagttgagcagggtggttatcgctcctgggaattcggcgagcttcct
gaaaccttagagattcaaaagggcaataaaaccttgtttggttacccagctctagtagat
cggattgattattgcgaccttgaggtatttgatgatttagaggaggcgcgtaagcagcat
gcccttggattgcgtcgcttatttgcactgagcaataaagatacgctcaaagcattgcaa
aaacagttgccgggtattcgtgagctgggtctgttatttattaatgtgggatcagtagat
ggcttgatagatcagattctcaatctggcgcttgagcgagcatttatgggcgaaacactc
ccagtcaatgcggagcaatttacagaacggcttcaggcaggtaagcctcggttagcactc
attgcccaggaaatctctcgccatgctctaaatgcattacaggctcatgcagatttgcag
aaaaagactgctagcgcaaaagcggtttcacctaccgcttatgctgatatccaaactcaa
atacaaggcttgatttttccgaagtttgtcgctgagataccgtatgcccagctggtacat
gtacctcgttacttaaaaggggttgccatgcgtatcgataaattgcgctctaaccccagc
cgtgatgcgcaatgccaaaaggattgggagtcggtagcccgtccatggcaaaagctgatg
cagggcaataagggtgctgcctcctatgcaatggctgaggatcaggctttaacagatttt
cggtggcagctagaagagctcagggtcgctttatatgcccaggagcttaaaaccccaacc
ccaatgtccttaaagcgtcttgaaaaggtattggcaagcttgcgctaa
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