Polynucleobacter ibericus: AOC20_06815
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Entry
AOC20_06815 CDS
T09789
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
piu
Polynucleobacter ibericus
Pathway
piu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
piu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOC20_06815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
piu03019
]
AOC20_06815
Enzymes [BR:
piu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AOC20_06815
Messenger RNA biogenesis [BR:
piu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AOC20_06815
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
QWE08135
LinkDB
All DBs
Position
complement(1341508..1342992)
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AA seq
494 aa
AA seq
DB search
MTNTATDLNSSSGVSESAAPSVTDTTAAASAAPSATITFADFGLDPKIQKAVLEQGYTIP
TPIQAQSIPHVLAGSDLMGAAQTGTGKTAAFVLPIIQKILRHASSSASPARHPIRALVLT
PTRELAVQVSENAASYSKHTDLRAAVVYGGVDMKEQVAILRNGVEILIATPGRLLDHISS
KVANLSQVEILVLDEADRMLDMGFLPDLQRIIDLIPAQRQTLLFSATFSPEIKKLAQSYL
RTPVTVEVARQNAAADTVKQVVHMVSSADKQRAIVKVLEARTRAGLSRQCIIFTNSRLGC
AKLSRALERDGIKAGAIHGDKSQGERTLTLDAFKSGAIEALVATDVAARGLDIPDMPCVI
NHELPYNAEDFIHRIGRTGRAGSKGDAIALVDASEKRLLDDIEKLMKRKLDVKPLPEGEP
SQSRPSSSSYGSSSGSRSSYSAPAKMSDPFFYKPYEPSTAPASATDAAKPEEKKVGITPA
KPAVGALLGGFKKK
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatactgctactgacttaaattcttcatcaggggttagcgaaagcgctgcccct
agtgttaccgacacgactgctgcagcttctgctgcaccctcagcaacaatcacttttgct
gactttggtttagatccgaaaattcaaaaagcggttctcgagcagggttacaccattccg
actccgattcaagcgcaatcgataccgcatgtattggcaggtagcgacttgatgggcgca
gcccaaaccggtaccggcaagactgccgcctttgtattgccgatcattcaaaagattttg
cgtcatgctagcagtagtgcctcaccagcacgtcatccgattcgggcgttagtgttgaca
ccaacacgcgagttggccgtacaggtttctgaaaacgctgcaagttactctaaacatacg
gatttacgcgctgctgttgtatatggtggcgtggatatgaaggagcaggtagcgattttg
cgcaatggcgtagaaattttgattgctaccccaggacgtttgctggatcacattagctct
aaggttgccaacctctcccaggtagagatcttggttttggatgaagccgatcgcatgctc
gatatgggtttcttgcctgatctgcaacgcattattgatttgatccctgcgcaaagacaa
accctattgttctccgcaaccttttcgccagaaattaaaaagctggcacaaagctacttg
cgtactccagtaacggttgaggtagctcgtcagaacgctgctgctgatactgttaaacaa
gtcgtgcatatggtgtcctctgcggataagcaacgcgccattgttaaagtcttagaagcg
cgtacccgtgccggtttatcacgtcaatgcatcatctttaccaatagccgtttaggttgt
gcgaaactctcgcgtgccttagaacgcgatggcattaaagcgggcgcgattcatggtgat
aagagtcagggcgagcgtactttaactttagatgcttttaagtctggcgcaattgaagcc
ttggtagcaaccgatgttgctgcacgcggtttagatattccggatatgccgtgcgtgata
aatcacgaacttccttacaacgcagaagactttattcaccgcattggtcgtactggccgt
gccggtagcaaaggtgatgcgattgccttggtagatgctagtgagaagcgcttgctcgac
gatatcgaaaagctcatgaagcgtaagttggatgtgaagcctttacctgaaggtgaacct
tcacaaagtcgtccatcgtctagtagttatggcagctcaagtggatccaggagctcttac
agcgctccagccaaaatgtcagatcctttcttctataagccttatgagccatctactgca
ccagcatctgcaacagatgctgcaaagccagaagagaaaaaagttggtattactccagcc
aagccagctgttggtgctttgcttggcggctttaagaaaaaataa
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