Aedoeadaptatus ivorii: NCTC13079_00111
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Entry
NCTC13079_00111 CDS
T06636
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
piv
Aedoeadaptatus ivorii
Pathway
piv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
piv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC13079_00111 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
piv03019
]
NCTC13079_00111 (cshA)
03009 Ribosome biogenesis [BR:
piv03009
]
NCTC13079_00111 (cshA)
Enzymes [BR:
piv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC13079_00111 (cshA)
Messenger RNA biogenesis [BR:
piv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC13079_00111 (cshA)
Ribosome biogenesis [BR:
piv03009
]
Prokaryotic type
rRNA helicases
NCTC13079_00111 (cshA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
Cas3-like_C_2
CMS1
FRG1
Motif
Other DBs
NCBI-ProteinID:
VEJ34358
UniProt:
A0A448UZI0
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All DBs
Position
1:104206..105840
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AA seq
544 aa
AA seq
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MKFNAFALSQEVLRGIEDMGFEEASPIQAQSMEPLLAGLDVIAQAQTGTGKTAAYGVPLL
ERVTGEKVVQGLVLCPTRELCLQVANELAKLGKYKKEIHILPVYGGTAIDRQIRALKKGV
QIVVGTPGRVMDHMRRRTLDFSGLKVAVLDEADEMFDMGFRDDMQTILDETPETRQTCFF
SATMEKEIMDFSARFQRDPEIIRIRHKQLTVENIEQYYLEMTGAMKPEILSRLVDIYDPK
LTIVFCNTKKRVDELVTEMASRGYSVDGLHGDLKQGQRDAVMRRFRQSSIDMLVATDVAA
RGIDVGDVDMVVNYDLPQDEEYYVHRIGRTARAGRKGLSFSFVVGRDIYKMEDIVRYTKA
DLRYMALPTMEEMDTRSRENLQGRIAAALEEDGDIALYKPMVDALLAMEYGAVEICAALM
KLLDDAGQGKKHDALEQVDYGKKFRARGLRKDKKGKKDKKKAKQNGAYANIYLDKGRKQG
INPKVILAIFKNDTTIPKDVVGNILIRDRHTVVELPKEVAKDAIRQLASVKVRGKKIHAR
FYRD
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttaatgcgtttgccctatcccaagaggtcttacggggcatcgaggatatgggt
tttgaggaagcctcgccgattcaggcacagagcatggaacccttacttgcgggactcgat
gtcatcgcccaggcacagacgggaacgggaaagacggcggcatacggtgtgcccctattg
gagcgggtcaccggggagaaggtcgtacagggactggtcctctgtcccaccagggagttg
tgcctgcaggtggccaacgaactcgccaagctcggaaaatacaagaaagaaattcacatt
ctgccggtctacggcggcaccgccatcgatcggcagatccgcgccttaaaaaagggcgtg
cagatcgtagtgggtacgccgggccgggtgatggaccatatgcgccggcgcaccctcgac
ttctcggggctgaaggtggcggtcttggacgaggccgacgagatgttcgacatgggcttt
cgggacgatatgcagacgatcctcgacgagacgcccgagacgcgccaaacctgtttcttc
tccgccaccatggagaaggaaattatggatttctccgcccgctttcagcgggatcccgag
attatccgcattcgccataagcaactgacggtagaaaatatcgagcaatactatctcgag
atgaccggcgccatgaagcccgagatcttaagccgcctggtggacatctacgatcccaaa
ctcaccatcgtcttctgtaacaccaaaaaacgggtggacgagctggtgaccgagatggca
tcgcggggatactccgtcgacggcctgcacggcgatctgaaacagggacagcgcgatgcg
gtcatgcgccgcttccgccagtccagcatcgatatgctcgtcgccaccgacgtggcggcg
cgggggatcgacgtgggcgatgtggatatggtcgtcaactacgacctgccccaggacgag
gagtactacgtacaccggatcggaagaaccgcccgcgccggcagaaagggcctgtccttt
tcgttcgtcgtcggccgcgacatctataagatggaagacatcgtccgctacaccaaggcg
gatctgcgctatatggcgcttcccaccatggaagagatggacactcgctctcgcgaaaat
ctgcagggccgcatcgccgccgccttggaagaagacggggacatcgctctctataagccg
atggtcgacgcgcttctcgccatggaatacggcgcggtggaaatctgcgccgccctcatg
aagctcctcgacgacgcggggcagggcaaaaagcacgacgcgctggaacaggtggactac
ggcaagaagttccgcgcccggggcctgcgcaaggacaagaaaggcaaaaaggacaagaag
aaggcgaagcaaaacggcgcttacgccaatatctatctggacaagggaagaaagcagggg
atcaatcccaaggtgattctcgcgatcttcaaaaacgacacgacgatccccaaggacgtc
gtgggcaatatcctgatccgcgaccgccacacggtggtggagctgccgaaggaagtcgcc
aaggacgccattcgccagttggcgagcgtcaaggtgcgcggcaaaaaaatacacgcgcgg
ttctaccgcgactaa
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