Pseudomonas inefficax: RIN61_03810
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Entry
RIN61_03810 CDS
T09811
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K10943
two-component system, response regulator FlrC
Organism
pix
Pseudomonas inefficax
Pathway
pix02020
Two-component system
pix02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pix00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RIN61_03810
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RIN61_03810
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
pix02022
]
RIN61_03810
02035 Bacterial motility proteins [BR:
pix02035
]
RIN61_03810
Two-component system [BR:
pix02022
]
Other families
FlrB-FlrC (polar flagellar synthesis)
RIN61_03810
Bacterial motility proteins [BR:
pix02035
]
Flagellar system
Flagellar assembly proteins
Others
RIN61_03810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
HTH_8
AAA_5
AAA_16
MCM
HTH_20
AAA
FleQ
HTH_30
MerR
AAA_3
AAA_19
Mg_chelatase
AAA_2
DUF2249
HTH_24
HTH_28
HTH_11
HTH_23
nSTAND3
Sigma70_r4_2
AAA_22
HTH_1
AAA_7
ATPase
HTH_17
AAA_14
HTH_Mga
PDE8A_N
Myosin_head
Motif
Other DBs
NCBI-ProteinID:
WNN40443
LinkDB
All DBs
Position
complement(847966..849321)
Genome browser
AA seq
451 aa
AA seq
DB search
MAIKVLLVEDDRVLRQALGDTLEIGGFAYQAVGSAEEALEAVLGEAFSLVVSDVNMPGMD
GHQLLAQLRRQHPQLPVLLMTAHAAVERAVEAMRQGAADYLVKPFEPKALLSLVERHAAG
RVADEEGPVACEPASRQLLELAARVARSDSTVLISGESGTGKEVLARYIHQQSPRAAQPF
VAINCAAIPDNMLEATLFGHEKGAFTGAIAAQAGKFEQAEGGTLLLDEISEMPMALQAKL
LRVLQEREVERVGGRKPISLDIRVLATTNRDLAGEVAAGRFREDLYYRLSVFPLAWRPLR
ERPGDILQLAERLLARHVAKMKHAPVRLSPQARACLQAYAWPGNVRELDNALQRALILQQ
GGVIEAADFCLAGAIPLSAGTEPLPEVAAEVSGLGDDMRRHEYQMIIDTLRAERGRRKEA
AERLGISPRTLRYKLAQMRDAGFDVEASLFG
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggcaatcaaggtgctgctggtcgaggatgaccgcgtattgcgccaggcgctgggcgat
accctggaaatcggcggtttcgcctaccaggcggtgggcagtgccgaagaggcactggaa
gcggtgctgggtgaggccttcagcctggtggtcagcgatgtgaacatgcctggcatggat
ggccaccaactgctggctcagctgcgccgccagcatccgcaattgcccgtgttgctgatg
accgcgcatgccgcggtggagcgcgccgtcgaggcgatgcgtcaaggcgccgccgactat
ctggtcaagccgttcgaacccaaggcgttgctcagcctggtcgagcggcatgccgccggg
cgcgtggctgacgaagaaggtccggtggcctgcgagccggccagccgacagttgctggag
ctggccgcgcgggtggcgcgcagtgactcgaccgtgctgatctccggcgaatccggcacc
ggcaaggaagtgctggcgcgctacattcaccagcagtcgccgcgggcagcgcagcccttc
gtggcgatcaattgtgctgccatccccgacaacatgctcgaggccaccctgttcggccac
gagaagggggccttcaccggcgccatcgctgcgcaggcgggcaagttcgagcaggccgaa
ggtggcaccttgctgcttgatgagatctcggaaatgccaatggccttgcaggccaagctg
ctgcgcgtgctgcaggagcgcgaggtggagcgggtaggcgggcgcaagccgatcagcctg
gatattcgtgtgctggccaccaccaaccgtgacctggctggcgaggtagcggccgggcgc
ttccgtgaagacctgtactatcgcctgtcggtgttccccctggcctggcgccccctgcgc
gaacgcccgggtgacatcctgcaattggccgagcgcctgttggcgcgacatgtggcgaag
atgaagcacgccccggtccgcctgtcgccccaggcgcgcgcatgcctgcaggcgtatgcc
tggccgggcaatgtgcgtgagctggacaatgccctgcagcgggcgctgatcctgcagcag
ggcggggtgatcgaggcggcggatttttgtctggcaggcgccattccattgtcagctggc
acggagccattacctgaggtggcagccgaggtcagcgggctgggcgatgacatgcgtcgt
catgagtaccagatgatcatcgacaccctgcgcgccgagcgcggtcgccgcaaagaggcg
gctgaacgcctggggataagcccgcgtaccctgcgctacaagctggcgcagatgcgtgat
gccgggtttgacgtcgaggccagcctgttcggttga
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