Pseudomonas inefficax: RIN61_04310
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Entry
RIN61_04310 CDS
T09811
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pix
Pseudomonas inefficax
Pathway
pix03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pix00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RIN61_04310 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pix03019
]
RIN61_04310 (recQ)
03400 DNA repair and recombination proteins [BR:
pix03400
]
RIN61_04310 (recQ)
Enzymes [BR:
pix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RIN61_04310 (recQ)
Messenger RNA biogenesis [BR:
pix03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RIN61_04310 (recQ)
DNA repair and recombination proteins [BR:
pix03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RIN61_04310 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
Sigma70_r4_2
HTH_40
HTH_23
GerE
HTH_29
ResIII
Glyco_hydro_57
Motif
Other DBs
NCBI-ProteinID:
WNN40537
LinkDB
All DBs
Position
complement(955601..957748)
Genome browser
AA seq
715 aa
AA seq
DB search
MLEQAQRVLKDVFGYDSFRGRQAAIIDCVANGGDALVLMPTGGGKSLCFQVPGLLRPGLT
VVVSPLIALMDDQVATLDELGVPAAALNSTLTPEQQRDLAGRLRRGEVKMLYLAPERLVQ
PRMLDFLRDLDISLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPHVPRIALTATADMRT
REEIVQRLHLQGAERFLSSFDRPNIFYRIVPKEAPRKQLMAFLGERRGNAGIVYCLSRKK
VDETAAFLCDQGFPALPYHAGLAAETRAANQHRFLNEEGLIMVATIAFGMGIDKPNVRFV
AHLDLPKSLEAYYQETGRAGRDGLPSDAWMAYGLQDMVMLKQMLQNSEGDERHKRIEQHK
LDAMLALCEETRCRRQSLLAYFDETLEQPCGHCDNCVDQVQTWDATEPARQALSAVFRTG
QRYGVGHLVDVLLGKDTEKVRNFGHEKLSVFGVGKGLAEVEWRSLFRQLVARGLVDIDLE
GYGGLRLSDSCRPLLRGEVTLQLRRDLKPQTTARTSSSSGGSPASQLVRAEERELWEALR
TLRRKLAEEHSVPPYVIFPDSTLLEMLRSQPASLSDMAQVSGVGARKLERYGQAFLEVLN
NSGGTDEAPKVVLDLRHELVSLARAGMTPAQIAGQLNCSEKNVYSLLAEALGRQELSLEQ
ALDLPEDLLMEVQDAFLDGEGELPPVSAIAPLFGARVPEGVLYCVRAALAAEFEL
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacaggctcagcgcgttctcaaggacgtcttcggctacgacagtttccgcggg
cgccaggcagcgatcatcgactgcgtggccaatggcggcgatgccctggtgctgatgccc
accggcggcggcaagtcgttgtgtttccaggtgccggggctgctgcgcccgggcctgacg
gtggtggtctcgccattgattgcgctgatggacgaccaggtcgccacgctcgatgaactg
ggtgtgccggccgccgcgctgaactccacgctgaccccggaacagcagcgtgacctggcc
gggcgcttgcgccgtggcgaagtgaagatgctgtacctggcccccgagcggctggtgcag
ccgcgcatgctcgacttcctgcgcgacctggatatctcgctgttcgccatcgacgaggcc
cactgcgtgtcgcaatggggccacgatttccgccccgaatacctgcaactgggccagttg
gccgagctgttcccgcatgtgccgcgcatcgcgctgaccgccaccgccgacatgcgcacc
cgcgaagagatcgtccagcgcctgcacctgcaaggcgccgaacgcttcctgtcgagtttc
gaccggcccaacatcttctaccgcatcgtgcccaaggaggcgccgcgcaagcagctgatg
gccttcctcggcgagcgccgcggcaacgccggcatcgtctattgcctgtcccgcaagaag
gtcgacgaaaccgctgccttcctctgcgatcagggcttcccggcgctgccgtatcatgcc
ggcctggctgccgagacgcgtgcggccaaccagcaccgcttcctcaacgaggaagggctg
atcatggtcgccaccatcgccttcggcatgggtatcgacaagcccaacgtgcgctttgta
gcgcaccttgacctgcccaagtcgctcgaggcgtactaccaggagactggccgcgccggc
cgtgacgggctgccgtccgatgcctggatggcctacgggctgcaggacatggtcatgctc
aagcagatgctgcagaactccgaaggtgacgagcgccacaagcgcatcgagcagcacaag
ctcgacgccatgctggccctgtgcgaagaaacccgttgccgccgccagtcgctgctggcc
tatttcgacgaaacgctcgagcaaccgtgcgggcactgtgacaactgtgtcgaccaggta
cagacctgggacgccaccgagccggcccgccaggcgctgtcggcggtgttccgcactggc
cagcgctacggtgtcggtcacctggtcgatgtgctgctgggcaaggacaccgagaaggtg
cgcaatttcggccacgaaaaactctcggtgtttggcgtcggcaaggggctggccgaggtc
gagtggcgttcgctgttccgtcagctggtggcacgcggcctggttgacatcgacctggaa
ggctacggtggcctgcgcctgtccgacagctgccggcctctgttgcgtggcgaggtgacc
ctgcagctgcgccgtgacctcaagccacagaccaccgccaggacttcttcgtccagtggc
ggcagcccggccagccaactggtgcgtgccgaagagcgcgagctgtgggaagcactgcgt
accctgcggcgcaagctggccgaggaacacagtgtgccgccctatgtcatcttccccgac
tcgacgctgctggagatgctgcgcagccagccggccagcctcagcgacatggcccaggtc
agcggcgtgggggcgcgcaagctggagcgttatggccaggccttcctcgaggtgctgaac
aacagcggcggcaccgacgaagcaccgaaagtggtgctcgacctgcgccacgaactggtc
agcctggcccgcgccggcatgactccggcgcagatcgccggccagctcaactgcagcgag
aagaatgtctacagtctgctggccgaggcgctgggccgccaggaattgagcctggaacag
gccctggacctgccggaagacctgttgatggaagtgcaggatgccttcctcgatggcgag
ggcgagttgccaccagtgtcggcgattgcgccgctgttcggggcacgggtgccggagggc
gtgctgtactgcgtgcgggctgcgctggcggccgaattcgagctgtaa
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