Pseudomonas inefficax: RIN61_04770
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Entry
RIN61_04770 CDS
T09811
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pix
Pseudomonas inefficax
Brite
KEGG Orthology (KO) [BR:
pix00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pix03016
]
RIN61_04770 (rnd)
Enzymes [BR:
pix01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
RIN61_04770 (rnd)
Transfer RNA biogenesis [BR:
pix03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RIN61_04770 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
WNN40627
LinkDB
All DBs
Position
complement(1078544..1079677)
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AA seq
377 aa
AA seq
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MAIEIHWIRDDQSLAEHCRDWHQLPFVAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPL
LIGNWQPLADLLDDSGVVKVLHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNLGFSMGY
SRLVQEVLGIDLPKGETRSDWLQRPLSETQVSYAAEDAVHLAELFTVLRPRLSDDKYAWV
LEDGAELVAALRREVEPESLYRDVKLAWKLAPQQLAVLRELCAWREREARNRDVPRNRIL
KEHSLWPMAKSQPSNLSALAKIDEMHPRTIRQDGEFLIQLIKRAASLPAEQWPQALPEPL
PIEAAGILKQLRAIGQAEGERLGIAPELMLRKKALEALLKSGYPNGPYQLPDSLRGWRRE
RMGQALLDSLAGAGETR
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgaaatacactggatccgtgacgaccagagcctggccgaacactgccgcgac
tggcaccagctgccctttgtcgccgtcgataccgaattcatgcgggtcgacaccttctac
ccgaaagccgggctgatccagatcggcgatggccagcgtgccttcctgatcgacccgttg
ctgatcggtaactggcaacccttggctgacctgctggatgacagcggcgtggtcaaggtg
ctgcacgcctgcagcgaagacctcgaggtgctgctgcgcctgactggcaagctgccacag
ccgctgttcgacacccagctggccgctggctacctgaacctgggcttctccatgggctat
tcgcgcctggtgcaggaagtgctgggtatcgacctgcccaagggcgaaacccgctccgac
tggctgcagcggcctctctcggaaacccaggtcagctatgccgccgaggatgccgtacac
ctggccgagctgttcaccgtgttgcgcccgcgcctgagtgacgacaagtacgcctgggtg
ctggaggacggcgccgagctggtggctgcattgcgccgcgaagtcgaacccgaaagcctg
taccgcgacgtcaagctggcctggaagctggcaccccagcaactggcggtgctgcgcgag
ctgtgcgcctggcgcgagcgtgaagcgcgcaaccgcgatgtgccgcgcaaccgcatcctc
aaggagcactcgctgtggcccatggccaagagccagccgagcaacctgtcggcgctggcc
aagatcgacgagatgcatccgcgcaccattcgtcaggacggtgagttcctcatccagctg
atcaagcgtgccgccagcctgccagccgaacaatggccacaggccttgcccgagcctttg
ccgatcgaggccgcaggcatcctcaagcagctgcgtgccatcggccaggccgaaggtgag
cgcctgggcattgcccccgaactgatgctgcgcaagaaagccctggaagcgctgctcaag
agcggctaccccaatggcccctatcaattgcccgattcgctgcgcggctggcgccgtgag
cgcatgggccaggccctgctggacagcctggcaggcgccggagagacccgatga
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