Pseudomonas inefficax: RIN61_05340
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Entry
RIN61_05340 CDS
T09811
Symbol
tssM
Name
(GenBank) type VI secretion system membrane subunit TssM
KO
K11891
type VI secretion system protein ImpL
Organism
pix
Pseudomonas inefficax
Pathway
pix02025
Biofilm formation - Pseudomonas aeruginosa
pix03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
pix00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
RIN61_05340 (tssM)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
RIN61_05340 (tssM)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pix02044
]
RIN61_05340 (tssM)
Secretion system [BR:
pix02044
]
Type VI secretion system
Imp/Vas secretion system core components
RIN61_05340 (tssM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IcmF-related_N
IcmF-related
IcmF_C
IcmF_helical
nSTAND_NTPase5
DUF4131
Motif
Other DBs
NCBI-ProteinID:
WNN40729
LinkDB
All DBs
Position
complement(1196817..1200326)
Genome browser
AA seq
1169 aa
AA seq
DB search
MKAFFSFVIRWVIPLLGLIALSLIIWFVGPLLEMLASPTPRWLLIVLLFALWGAYRAWRI
VQARQQAAKVMQSLAAETAADPASVATAEELSALRQRMDEALALLKKARLGGDERRNLYE
LPWYVIIGPPGSGKTTALVNSGLHFPLAAQLGEGAIRGVGGTRNCDWWFTDQAVLLDTAG
RYTTQDSHAQVDKAAWLGFLDLLKTQRSRRPIDGAFIAISLSDLLLGSDAERAAHAAAIR
ARIQELYSQLGVRFPVYLMLTKLDLVPGFMEFFDNLGKDERAQVWGMTFPLDTLEQGGDG
PLAQFDNEFGLLEQRLGERLVERLQQERDPARRDLIYGFVQQFAALHGNLKGFLDGIFKP
NAFEARALLRGVYFTSGTQEGSPIDRLIGSMAQSMGLDRAHLARQSGSGRSYFIERLFTA
VAFAERGLVGSNPKVERRRRWIARGALALSVALVLLVGTLWAVSYRANQQYIAEVDSRLQ
PLGKSVQGLSPAQRNVVDVLPLLNAVRHLADDPPSWAEGLGLYQGDMLESESQSLYRKLL
IAIFAPRLVTRIEEQLYAGGPSDYLYEGLKAYLMLADAEHYDPDFIKAWITLDWERQLPR
DLAPDLRKALEQHLAALFDKRPPNARLDQRLIDDTRRQLQQLPVAQRVYDRVKRQKLPGG
VEDFRVSDAAGRDAALVFRFKSGKPLSEPLPGLFTVQGYRQAFLAASLAQSTTLAEERWV
LGRAPGEAGDARRLADDVQQLYYQDYIRHWDALLDDLDFVPITSVGQAADVLRVLSGPTS
PMKQLLQAVARETNLAQPTTLDKVQDKAEQAGVDQLRQRLGGLLGDAPLPVDSPASRTQD
PVTAHFAELAALVGNGEGQPAAIDGLLTDLNALYVQVSAMVGASGDALLGEAKNQAQAAA
QRVALGAARQPKVVQNLVSSVLGSTHGVVMGGVRNQLNAAWASEVLNVYRQSLSGRYPMA
AGSSRDATLEDFGQFFGVGGVMDSYFRKYLQPYVNTSSTPWSWQPGAAQKLGINSSVLYT
FQRAATIRDAFFRSGNGLQPGVRFELKPVAMDASITQFLLDLDGQQVSYDHGPSRPVALQ
WPNPNSIGVVRLSIAPPAASGRSGLTVEGPWAWFRLLDQSDLVAGSSPERFNLRLRVDGA
SVSYELRASSAFNPFRSRVVSGFSLPEHL
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
gtgaaggcgtttttcagttttgtcattcgctgggtaatcccgctgctgggcctgatcgcc
ctgagcctgatcatctggttcgtcgggccgttgctggaaatgctggcgtcgcccacgcca
cgctggctgctgattgtcctgctgttcgcgctgtggggcgcttaccgtgcctggcgcatc
gtgcaggcgcgccagcaggcggccaaggtcatgcaaagcctggcggccgagaccgccgcg
gaccctgccagcgtggccaccgccgaagaactgtcagccctgcgccagcgcatggacgaa
gcactggccctgctgaagaaggcccgcctgggcggtgacgaacggcgcaacctctacgag
ttgccgtggtacgtgatcatcggcccgcccggttcgggcaagaccaccgcgctggtcaat
tctggcctgcacttcccgctggccgcgcaactgggcgagggcgccatccgcggtgtcggc
ggcacgcgcaactgcgactggtggttcaccgaccaggcggtgctgctcgacactgccggc
cgttacaccacccaggacagccacgcccaggtcgacaaggcggcctggctgggcttcctc
gacctgctcaagacccagcgctcgcgccgcccgatcgacggtgcgttcatcgccatcagc
ttgtctgacctgctgctgggcagcgacgccgagcgcgccgcacacgcagcggcgatccgt
gcgcgcatccaggagctgtacagccagctgggcgtgcgcttccccgtatacctgatgctg
accaagctcgacctggtaccgggcttcatggagtttttcgacaacctgggcaaggacgaa
cgcgcccaggtgtggggcatgaccttcccgctggataccctcgagcagggcggtgatggc
ccgttggcgcagttcgacaacgagttcgggctgctcgagcagcgcctcggcgagcgcctg
gtcgaacgcctgcagcaggagcgcgacccggcccggcgcgacctgatctacggcttcgtg
caacagttcgccgccctgcatggcaacctcaaggggttcctcgatggcatcttcaagccc
aacgccttcgaggcgcgggcgttgctgcgcggggtatatttcaccagcggcacccaggaa
ggcagccccatcgaccggctgatcggcagcatggcccagagcatgggcctggaccgtgcg
cacctggcacgccagagcggtagcgggcgcagctatttcatcgagcggctgttcactgcc
gtggctttcgccgagcgtggcctggtcggcagcaacccgaaggtggagcggcggcgccgg
tggatcgcccgtggcgcgctggccctgagcgtggccctggtgctgctggtcggcaccttg
tgggccgtcagttaccgggccaaccagcaatacatcgccgaggtcgacagccgcctacag
ccgctgggcaaaagtgtgcaaggcctgagccctgcgcagcgcaacgtggtcgacgtgctg
ccgctgctcaacgccgtgcgccacctggccgacgacccacccagctgggccgaaggcctg
ggcctgtaccagggcgacatgctcgaaagcgaatcgcagagcctgtaccgcaagctgctg
atcgcaattttcgccccacgcctggtcacccgcatcgaggaacagctgtacgccggcggc
ccgtcagactacctctacgaaggcctcaaggcctacctgatgctggccgatgccgagcac
tacgacccggacttcatcaaggcctggatcaccctcgactgggaacgccagttgccccgc
gacctggcgccggatctgcgcaaggccctggagcagcacctggcggcgctgttcgacaag
cgcccgccgaatgcccgcctggaccagcgcctgatcgacgacacccgtcgccagctgcag
caattgccggtggcccagcgggtgtacgaccgggtcaagcgccagaaactgccaggcggg
gtcgaggatttccgcgtcagcgacgcggccgggcgcgatgcagccctggtgtttcgcttc
aagagcggcaagccgctgagcgagccgctgccggggctgttcaccgtgcagggctaccgc
caggcgtttcttgccgccagcctggcgcagagcaccacgctggccgaagagcgctgggta
ttgggccgcgcgccgggcgaggcaggtgatgccaggcgcctggccgatgatgtgcagcag
ctctattaccaggactacatccgccactgggatgccctgctcgacgacctggactttgtg
ccgatcaccagtgtcggccaggccgccgatgtactgcgggtgctgtccgggcccacttcg
ccaatgaagcagctgctgcaggcggtagcccgggaaaccaacctggcgcagccgaccaca
ctcgacaaggtccaggacaaggccgaacaggccggtgtcgaccagctgcgccagcgcctt
ggcgggctgctcggcgacgcaccgctgcccgtcgacagccctgcttcccgcacgcaggac
ccggtgacggcgcacttcgccgagttggccgcgctggtcggcaacggcgaaggccaacct
gccgccatcgacggcttgctcaccgacctcaatgcgctctacgtgcaggtcagcgccatg
gtcggcgccagcggcgatgccctgctaggcgaggccaagaaccaggcccaggcggcggcg
caacgggttgccctgggcgcggcgcgccagcccaaggtggtgcagaacctggtcagctcg
gtactcggctcgacccacggcgtggtcatgggtggggtgcgcaaccagctcaacgccgcc
tgggccagcgaagtgctgaatgtctaccgccagtcgctcagtggccgctacccgatggcg
gccggcagctcgcgcgatgccaccctggaagacttcggccagttcttcggggtcggcggg
gtgatggacagctacttccgcaagtacctgcagccctacgtcaacacctccagcacaccc
tggagctggcagccgggtgcggcgcagaagcttgggatcaacagcagcgtgctgtacacc
ttccagcgcgcggcgaccattcgcgatgccttcttccgcagcggcaacggtctgcagcca
ggcgtgcgcttcgagctcaagccagtggcgatggacgccagcatcacccagttcctgctc
gacctcgacggccagcaggtcagctacgatcacgggccgagccgcccagtggcgttgcag
tggcccaaccccaacagcatcggcgtggtgcgcctgtcgattgcgccgccagcggccagc
ggccggtcggggctgaccgtggaaggcccgtgggcgtggttccgcctgctcgaccagtcc
gacctggtggccggcagctcgccggagcgcttcaacctgcgcttgcgcgtggacggcgcc
agcgtgtcatacgagctgcgtgccagcagcgccttcaacccgttccgcagccgagtggtc
agcggtttcagcctgccggagcacctgtga
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