Pseudomonas inefficax: RIN61_05980 Help Entry RIN61_05980       CDS       T09811                                  Name (GenBank) DEAD/DEAH box helicase   KO K03724   ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] Organism pix  Pseudomonas inefficax Brite KEGG Orthology (KO) [BR:pix00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:pix03400]     RIN61_05980 Enzymes [BR:pix01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.4  DNA 3'-5' helicase      RIN61_05980     5.6.2.6  RNA 3'-5' helicase      RIN61_05980 DNA repair and recombination proteins [BR:pix03400]  Prokaryotic type   Other factors with a suspected DNA repair function    DNA helicases     RIN61_05980 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DEAD_assoc WH4_Lhr DEAD WH_Lhr Helicase_C WH3_Lhr ResIII Cas3-like_C_2 MarR_2 AbiEi_4 HTH_24 HTH_Crp_2 GntR LexA_DNA_bind HTH_5 Rrf2 DprA_WH TrmB AAA_25 HTH_9 Motif Other DBs NCBI-ProteinID:  WNN40851 LinkDB All DBs Position 1341458..1345726 Genome browser AA seq 1422 aa AA seqDB search MNLPAKHHPVLELFHPAVRTWFRRHFATVTDAQAQAWPLIHAGQSMLLAAPTGSGKTLSA FLAVLDELFRQGLEHQGELPARTQVVYVSPLKALSNDIRLNLQAPLEGISQALADQGLNA PRITTAVRSGDTPQKERAAMRKLAPHILVTTPESLYVLMGSASGREGLASVHTVIVDEIH ALAGNKRGAHLALTLERLQALCNRPLRRIGLSATQRPVERVAQFLVGNDRPCAIVDVGHA RQRDLAIEVPPVPLGAVMATDVWGLVYDRLATLAREHRTTLVFVNTRRLAERITRHLSDR LGKEAVAAHHGSLAKELRLDAEQRLKNGQLQVLVATASLELGIDIGDIELVCQIASPGSI AALLQRVGRAGHQVDGVPKGRLFPTSRDDLIECVALLDCIRRGELDELHIPRAPLDVLAQ QIVAEASNQPWHEQALFDCLRQATPYAELDQQHYQALLRMLAEGYNGRQGVRSAYLHRDA VSGTLRGRRGSQLTALTSGGTIPDNADYAVLLEPQALNIGSVNEDFAVESIAGDIFQLGN ASYRILRVEPGRVRVEDAHGLPPTIPFWLGEAPGRSDELSAAVARLQAQIDQQLADNDQA EVLAWLQGTFELGEDAASQLLDYLARTREVLGALPSQDTLVMERFFDESGGTQLIIHSPY GSRINRAWGLALRKRFCRTFNFELQAAASEDAIVLSLSSSHSFELDDVWRYLNSRSAEAI LVQALLDAPLFGVRWRWNAGVTMALPRFVGGRKVAPQIQRMKSEDLIAAVFPEQIACLEN IVGERQIPDHPLVEQTLDDCLHEAMDSEGWLALLRRMESGAVRLLCRDLPAPSPLASAIL NARPYAFLDDAPLEERRTQAVLNRRWSEVQNGDDLGALDADAIAAVAAEAWPQPGNADEM HEALMGLGAISQDEVQGNASWELLLRQLAKAGRALRLVDEKLWLARERLSLLQALYPGSR LEPALQVLPGFDQVIEPDVALVELLRARLSGHGPLTRAQIAAALGKPPQAIEQALARLEA EGYVLRGHFSPGASELQWCERHLLARIHRYTVKRLRREIEPVSLQDFMRFLFDWQHLAND THLRGPQAVAEVLGQLQGFPSAAGAWEAELLPARIKDYSPHWLDDACRSGQFAWSRLAAT VSSNTLSSTPLVLLPREHLGLWRSLAPVPAVDSLGARAQRVHQVLNAHGALFFDELAHDA HLLPSELETALQELVGAGLVGADSFTGLRSLITPAAKRTSRNSRRGHPPLSSSMSHAGRW ALLRRGTVDDSQRLEHIARALLRRYGVVCWRLLERESDVLPPWRELLRCYHRLEARGEIR GGRFIAGLAGEQFALPEAVGLLRQVRRRELDGALVVVSASDPLNLVGSLLPGAKVPAVSG NRLLYRDGVPVAVRVAGHYSYLVEAPAQEQESWRQKLLRDTF NT seq 4269 nt NT seq  +upstreamnt  +downstreamnt atgaacctgcccgccaaacaccacccggtgctcgagctgttccaccccgccgtgcgcacc tggttccgtcgccacttcgccacggtgaccgatgcccaggcccaggcgtggccgttgatc catgccggccagtcgatgctgctggccgcgccgaccggttcgggcaagaccctcagcgcg ttccttgccgtgctcgacgaactgtttcgccagggcctggagcatcagggcgaactgccc gcacgaacccaggtggtctatgtttcgccactcaaggcgttgtccaacgacatccgtctg aacctgcaggcgccgctggaaggcatcagccaggccctggcggaccagggcctgaacgcc ccgcgcatcaccacggccgtgcgcagcggcgacaccccacagaaggagcgtgccgccatg cgcaagctggcgccgcacatcctggtgaccacacccgaatcgctctacgtgctgatgggc tcggcttcgggccgtgaaggcctggccagcgtgcacacggtgatcgtcgacgaaatccat gccttggccggcaacaagcgcggcgcccacctggcactgaccctggagcgcctgcaggcc ctgtgcaaccggccattgcggcgtatcggcctgtcggccacgcaacgcccggtcgagcga gtggcgcaattcctggtcggcaacgaccgtccctgcgcaatcgtcgatgtcggccatgct cggcagcgcgacctggccatcgaggtgccgccagtgccgctgggtgcagtgatggctacc gatgtctggggcctggtctatgaccgcctggccaccctggcgcgcgaacaccgcaccacc ctggtgttcgtcaacacccggcgcctggccgagcgcatcacccgccacctcagcgaccgc ctggggaaagaggcggttgccgcgcatcacggcagcctggccaaggaactgcgcctggat gccgaacaacgcctgaaaaacggccagttgcaggtgctggtggccactgcgtcgctggag ctgggcatcgatatcggcgacatcgagctggtctgccagatcgcttcgccaggttcgatc gcggccttgctgcagcgggtcggccgcgctggccaccaggtcgatggcgtgcccaagggg cgtctgttcccgacttcgcgcgatgacctgatcgaatgcgtggccctgctcgactgcata cgccggggcgagctggacgaactgcacattcctcgggcgccgctggatgtgctggcccag cagatcgtagccgaggccagcaaccagccctggcacgaacaggccctgttcgactgcctg cgccaggccacgccctacgccgaactcgaccagcaacattaccaggcgctgctgcgcatg ctcgccgagggctacaacggccgccagggcgtgcgcagtgcctacctgcaccgcgatgcg gtgagcggcaccctgcgtggccgtcgtggcagccaactgaccgcgctgaccagcggcggc accatccccgacaacgccgactacgccgtgctgctcgaaccgcaggcgctgaacatcggc agcgtcaacgaagactttgccgtggaaagcatcgccggcgatatcttccagctgggcaat gcctcctatcgcatcctgcgggtcgaaccaggccgggtgcgggtggaggatgcccatggc ctgccaccgaccatcccgttctggctgggcgaggcgccggggcgcagcgacgagctgtct gccgcggtggcccggctgcaggcgcagatcgaccaacagctggctgacaacgaccaggcc gaggtgctggcatggttgcagggtaccttcgaactgggcgaagacgccgccagccagttg ctcgactacctggcccgcacccgcgaagtgctcggcgccctgccctcgcaggacacgctg gtgatggagcgcttcttcgatgagtccggcggtacccagctgatcatccattcaccctac ggcagccgtatcaaccgcgcctgggggctggccctgcgcaagcgcttctgccgcaccttc aacttcgagttgcaggcggcggccagcgaggacgccatcgtgctgtcgctgtcctccagc cacagtttcgaactggacgacgtgtggcgttacctgaatagccgcagcgccgaggcgatc ctggtccaggcgctgctcgatgcgccgctgtttggcgtgcgctggcgctggaatgccggc gtgaccatggccctgccgcgctttgtcggcggacgcaaggtggcgccacagatccagcgg atgaagagcgaagacctgattgccgccgtattccccgagcagatcgcctgcctggagaac atcgtcggcgagcggcagattcccgatcatccgctggtcgagcaaaccctcgacgactgc ctgcacgaggccatggacagcgaaggctggctggcgctgttgcggcgtatggaaagcggc gcagtgcgcctgctgtgccgcgacctgcccgccccttcgccgctggcgtcggccatcctc aacgcacggccttatgccttcctggatgacgcaccactggaagaacggcgcactcaggca gtgctcaaccggcgctggagcgaggtgcagaacggcgacgacctgggcgcgctggacgcc gatgccattgccgccgtcgcggccgaggcctggccgcagccgggcaacgccgacgaaatg catgaagcgttgatgggcctgggtgccatcagccaggacgaagtgcagggcaatgccagc tgggagctgctgctcaggcagttggccaaggccggccgggccctgcgcctggtggatgaa aagctgtggctggcgcgtgagcggttgagcctgctgcaggcactgtaccccggctcccgg ctggaacctgcgttgcaggtactgcctggcttcgatcaggtcatcgagccggacgttgcg ctggtcgaactgttacgagcccgcctgagcggccatggcccgctgacccgcgcgcagatt gcggcagcacttggcaagccgccgcaggccatcgaacaggccttggcccgcctggaggcc gaaggctatgtgctgcgtgggcatttcagccctggcgcaagcgaactgcaatggtgcgag cgccatttgctggcacgcatccatcgctacacggtcaaacgcctgcgccgggagatcgag ccggtcagcctgcaggacttcatgcgctttctgttcgactggcagcacctggccaacgac acacacctgcgtggcccgcaagcggtggctgaggtccttggccagttgcaagggttcccg agtgccgccggagcctgggaagccgaactgctgccggcacgtatcaaggactacagcccg cactggctcgacgatgcgtgccgtagcgggcagttcgcctggagccggctggcggcgacg gtgtcgagcaacaccctgtcgagcacaccgctggtactgctgccgcgcgagcaccttggc ctgtggcgcagcctggcccccgtgcctgcggtggatagcctcggcgcacgggcgcaacgc gtccaccaggtgctgaacgcacatggcgcgctgttctttgacgagctggcacacgacgcc cacctgctgcccagcgagttggaaacggccttgcaggaactggtaggcgcaggcctggtg ggagccgacagcttcaccggcctgcgcagcctgatcaccccggcggcgaaacgcacatcg cgcaacagccgacgcggccacccgccgctgtccagcagcatgtcccatgccgggcgctgg gccttgctgcgcaggggcactgtagacgacagccagcgcctggagcacatcgcccgggcc ctgcttcggcgctatggcgtggtgtgctggcgcctgctggagcgtgaaagcgatgtgctg ccgccctggcgtgaactgctgcgctgctatcacaggctggaagcgcgtggcgagattcgt ggcgggcgcttcattgccgggctcgccggcgaacaattcgccttgccggaggcggtgggg ctgctgcggcaggtgcggcggcgtgaattggacggggcattggtggtggtaagtgccagt gacccgctgaacctggtcgggtcgttgctgccgggggcgaaagtgccagcggtgagtggc aaccgtttgttgtatcgcgacggagtgccggtggcggtgcgggtggccgggcactattcg tacctggtcgaagcgccggcacaagagcaggaaagctggcggcagaagctactgcgcgac actttctga

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