Pseudomonas inefficax: RIN61_06530
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Entry
RIN61_06530 CDS
T09811
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
pix
Pseudomonas inefficax
Pathway
pix03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
RIN61_06530 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pix03400
]
RIN61_06530 (sbcB)
Enzymes [BR:
pix01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
RIN61_06530 (sbcB)
DNA repair and recombination proteins [BR:
pix03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
RIN61_06530 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RIN61_06530 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RIN61_06530 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
WNN40959
LinkDB
All DBs
Position
complement(1467331..1468764)
Genome browser
AA seq
477 aa
AA seq
DB search
MTSSIFWHDYETTGINPRCDRPLQVAGVRTDFDLNEIDEPISLYCRPSDDILPHPAACLV
TGITPQLLAEQGLCEAEFMTRVHAQLAHPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR
EWQGGNSRWDLIDIVRTAYALRPDGIEWPQQDGRTSLRLELLSKANGIDHGHAHEALSDV
RATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIRLLQPLVHISGRFSAARNYLGVVLPL
AWHPHNRNALIVCDLHQEALPLLRDSAEVLRQRLYTRHEELAEGELPVPLKLVQINRCPV
LAPLSVLRPADQRRLGLDLTLLQLRGEELAKQQAQWQDKLEHIYGKEDFALSEDPEQQLY
DGFLRDRDRRLCEQVRALEPAQLGRGQWMFDDPRLPELLFRYRARNFPETLTGEERQRWF
SFCQQRLSDPRWGAPNTLGDFEQARQQAWEGADEAGRRVLEAWQVHARQLQGQFAIG
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
gtgacctccagcattttctggcacgactacgaaaccaccggcatcaacccgcgctgtgac
cggccgctacaggtggccggcgtgcgcaccgacttcgacctcaacgaaatcgacgagccg
atcagcctttattgccggccctccgacgatatcctgccgcacccggccgcctgcctggtg
accggtattaccccgcaactgctggccgagcagggcttgtgcgaagccgagttcatgacc
cgggtacatgcgcaactggcgcaccctggcacctgcggtgctggctacaacaccctgcgc
ttcgacgacgaagtgacccgctacagcctgtaccgcaactttttcgacccttacgcgcgc
gagtggcagggcggcaacagccgctgggacctgatcgacatcgtgcgcacggcctacgca
ttgcgcccggacggcatcgagtggccgcaacaggacgggcgcaccagcctgcgcctggaa
ctgctgagcaaggccaatggcatcgaccacgggcatgctcacgaggcgctttccgacgtg
cgggcaaccatcgccctggcccgcctgatccgtcagaaacagcccaagttgtatgactgg
ctgttccagttgcgcagcaagcataaagtgatggagcagatccgtttgttgcagcctctg
gtgcatatatccgggcgcttctcggcggcacgcaattaccttggtgtcgtattgccattg
gcttggcacccgcataatcgcaatgcactgattgtgtgcgacctgcatcaggaagcccta
ccgttgttacgggatagtgctgaagttctacgccagcgtttgtatacccgccatgaagaa
ctggccgaaggcgaattacccgttccgctcaaattggtgcagatcaatcgctgcccggta
ctggcaccactttcggtattgcgcccggccgatcaacgacggctgggtctggacttgacg
ttgttacaattgcgcggcgaagaattggccaagcaacaggcgcaatggcaagacaagctg
gaacacatctatggcaaggaagacttcgccttgagcgaagacccggaacaacagttgtat
gacggttttctgagggaccgtgaccgccgcttgtgcgagcaagttcgtgcactggaaccg
gctcagttgggccgtgggcaatggatgttcgatgacccgcgcctgcctgaactgttgttc
cgctatcgggcgcgcaacttccccgagaccttgaccggcgaagagcggcagcgctggttc
agcttctgccagcagcgcctgagcgacccgcggtggggcgcgccgaatacgttgggcgac
ttcgaacaggcgcggcagcaggcctgggagggcgccgacgaggcggggcggcgtgtgctg
gaggcgtggcaggtacatgctcggcagttgcagggacagtttgcaattggctga
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