Pseudomonas inefficax: RIN61_07875
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Entry
RIN61_07875 CDS
T09811
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pix
Pseudomonas inefficax
Pathway
pix03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pix00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RIN61_07875 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pix03019
]
RIN61_07875 (pnp)
03016 Transfer RNA biogenesis [BR:
pix03016
]
RIN61_07875 (pnp)
Enzymes [BR:
pix01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RIN61_07875 (pnp)
Messenger RNA biogenesis [BR:
pix03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RIN61_07875 (pnp)
Transfer RNA biogenesis [BR:
pix03016
]
Prokaryotic type
tRNA degradation factors
RIN61_07875 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
S1_2
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
WNN41210
LinkDB
All DBs
Position
complement(1759609..1761714)
Genome browser
AA seq
701 aa
AA seq
DB search
MNPVIKTFQFGQSTVTLETGRIARQATGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFEGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV
AGTESAVLMVESEAKELTEDQMLGAVLFAHVEFQAVIQAVKELAAEAAKPTWDWQPAPAN
VELMNLVRGEFGEAVSQAYTITQKADRYNRLGQLRDEAIARLSNEETGPSASAIKEIFGE
LEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRGVQAMLPSDS
EFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGDKFAVLT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQ
IIAQSRSELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAADAAKQRILGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaagactttccagttcggtcaatcgaccgttactctcgaaacgggc
cgtattgcccgtcaggcaaccggcgccgtgctggttaccgtcgacaacgacgtcaccgtg
ctggtgactgtggtaggtgccaaacaggctgatccaggcaagggtttcttcccgctgtcg
gttcactatcaggaaaagacctacgccgccggcaagatcccgggtggcttcttcaagcgt
gaaggccgtccttccgagaaagagacgctgacctcgcgcctgatcgaccgtccgatccgt
ccgctgttcccggaaggcttcatgaacgaagtgcaggtcgtctgcaccgtggtttccacc
agcaagaagaccgacccggacatcgctgcgatgatcggtacctcggctgccctggccatt
tccggcattccgttcgaaggcccgatcggcgccgcccgcgttgccttccacgaaagcacc
ggctacctgctgaacccgacctacgagcaactggctgcttcgagcctggacatggtcgtt
gccggtaccgaatcggctgtactgatggttgaatcggaagccaaagagctgaccgaagac
cagatgctgggcgccgtgctgttcgcccacgtggaattccaggccgtgatccaggccgtc
aaggaactggccgccgaagccgccaagccgacctgggactggcagccagccccggccaac
gtcgagctgatgaacctggtccgtggcgagttcggcgaagccgtttcgcaggcctacacc
atcacccagaaggctgaccgctacaaccgcctgggccagctgcgtgacgaggccattgcc
cgtctgagcaacgaagagaccggcccgtccgccagcgccatcaaggaaatcttcggcgag
ctggaataccgcaccgtccgcgagaacatcgtcaacggcaagccgcgtatcgacggccgt
gacacccgcaccgtgcgcccgctgaacatcgaagtcggcgtactgccgaagactcacggt
tcggcgctgttcacccgtggcgagacccaggccctggtcgtcgcgaccctgggtaccgcc
cgtgacgcccagctgctggacaccctggaaggcgagaagaaagacccgttcatgctgcac
tacaacttcccgccattctcggtgggtgagtgcggccgcatgggcggtgccggccgtcgt
gaaatcggccacggtcgcctggcccgtcgtggcgtgcaggccatgctgccgagcgacagc
gaattcccgtacaccatccgcgtggtttcggaaatcaccgaatccaacggttccagctcc
atggcttcggtctgcggtgcttccctggcgctgatggacgctggtgtgccgatgaaggca
ccggttgccggtatcgccatgggcctggtcaaggaaggtgacaagtttgccgtcctgacc
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaggtagccggtaccgcc
aagggtgttaccgcgctgcagatggacatcaagatcaacggcatcaccgaagagatcatg
gaaatcgccctgggccaggccctggaagcgcgcctgaacatcctcggccagatgaaccag
atcatcgcccagtcgcgtagcgagctgtcggccaacgccccgaccatgatcgccatgaag
atcgatacggacaagatccgtgacgtcatcggtaaaggcggcgccaccattcgcgccatc
tgcgaagagaccaaggcttcgatcgacatcgaagacgacggctcgatcaagatcttcggc
gaaaccaaggaagcggcagatgctgccaagcagcgcatcctgggcatcaccgccgaggcc
gagatcggcaagatctacgtcggcaaggtcgagcgcatcgtcgacttcggtgccttcgtc
aacatcctgcctggcaaggacggcctggtgcacatttccatgctgagcgatgctcgcgtc
gagaaagtcaccgacatcctgaaagaaggccaggaagttgaagtactggtactggacgtg
gacaaccgcggccgtatcaagctgtcgatcaaggatgttgccgcagccaaggcttcgggc
gtctga
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