Pseudomonas inefficax: RIN61_09645
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Entry
RIN61_09645 CDS
T09811
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pix
Pseudomonas inefficax
Pathway
pix03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pix00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RIN61_09645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pix03019
]
RIN61_09645
Enzymes [BR:
pix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RIN61_09645
Messenger RNA biogenesis [BR:
pix03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RIN61_09645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WNN41547
LinkDB
All DBs
Position
2147479..2149368
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AA seq
629 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPAGHPDKSQRHGPRQPRALVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN
PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR
LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL
AHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKANSV
RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMVAPDEEKL
LKSIERVTRQKIPDGDLMGFDASQVEAEKPEVRERQQNNGRGGRNQQARGEGGKDANGGR
KDKGKDKGKAKQQAADKPADKEKSGDKQQQQRKPRDKKPRQQQQQASNNSAPKVPVDRDP
EEFLDDDIDNFGNRADYVSPYQGKNQGRNRRPGGNAGQGQGNGQRSNAGGQARNSGQPRS
GGGGGGGEKRPPRANNGGGARRDGGGRGRPARDDAARQEPAVRNPRQPEKQPVIIRKESK
LDRYPTPEQLDDLPSRPRGERPALLTRKG
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctcttgtccgcgctatcgaggctgcgggc
tatacccagccgacccccgtgcaacagcgggcgattcccgccgtgttgcaaggccgcgac
ctgatggtcgccgcacagacaggtactggtaaaaccggcggtttcgccctgccgatcctc
gagcgcctgttcccggccggccaccccgacaagtcgcagcgccacggcccgcgccaacct
cgcgcgctggtcctgaccccgacccgtgaactggcagcccaggtgcatgacagcttcaag
gtctatgcccgtgaccttccactggtcagcgcctgcattttcggcggcgtcggcatgaac
ccgcagatccaggccattgccaagggtgtggacgtgctggtcgcctgccccggccgcctg
ctggacctggccggccaaggcaaggttgacctggcccacgtggaaatcctggtgctggac
gaagccgaccgcatgctcgacatgggcttcatccatgacgtcaagaaggtcctcgctcgc
ctgccggccaagcgccagaacctgttgttctcggccaccttctccaaggacatcaccgac
ctcgccgacaagctcctgcacaacccggagcgtatcgaggtcaccccgccgaacactacc
gtcgagcgtatcgaacagcgcgtctaccgcctgccggccagccacaagcgcgcactgctg
gcgcacctgatcacccagggtgcctgggaacaggtgctggtgttcacccgcaccaagcac
ggcgccaaccgcctggccgagtacctggaaaagcacggcctgaccgccgccgcaatccac
ggcaacaagagccagaacgcccgcacaaaggcgctggccgacttcaaggccaacagcgtc
cgcgtgctggtcgccaccgacatcgccgcccgtggcctggacatcgaccagctgccgcac
gtggtcaacttcgagctgccgaatgtcgaggaagactacgtccaccgcattggccgtacc
ggccgtgccggtcgttcgggcgaggccatttccatggttgcgccggatgaagagaagttg
ctcaagagcatcgaacgggtgaccaggcagaagatcccggacggcgacctgatgggcttc
gacgccagccaggtagaagccgaaaagcctgaagtgcgcgaacgccagcagaacaacggc
cgtggtggccgtaaccagcaggcccgcggcgaaggcggcaaagatgccaacggcggccgc
aaggacaagggcaaggataaaggcaaggccaagcaacaggctgcggacaagccggccgac
aaggaaaagagcggcgacaagcaacagcagcaacgcaagccgcgtgacaagaagccgcgc
cagcagcaacagcaggcaagcaacaacagcgcgccgaaagtgcctgtcgaccgtgatccg
gaagagttcctggacgacgatatcgacaacttcggcaaccgtgccgactatgtcagcccg
taccagggcaagaaccagggccgcaatcgccgcccgggtggcaatgccggccaaggtcag
ggtaatggccagcgcagcaacgccggtggccaagctcgcaatagcggccagccgcgcagc
ggcggtggcggcggtggcggcgagaaacgtccgccccgggccaacaatggtggcggtgcc
cgtcgtgatggcggcggccgtggtcgcccggcccgtgacgatgctgcccggcaagagccg
gccgtgcgcaacccacgccagccggaaaaacagccagtgatcatccgcaaggagtccaag
ctcgaccgttacccgacgcccgagcagctggatgacctgccaagccggccgcgcggtgag
cgcccggcgctgctgacccgcaagggctga
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