Pseudomonas inefficax: RIN61_11010
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Entry
RIN61_11010 CDS
T09811
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
pix
Pseudomonas inefficax
Pathway
pix00300
Lysine biosynthesis
pix00470
D-Amino acid metabolism
pix01100
Metabolic pathways
pix01110
Biosynthesis of secondary metabolites
pix01120
Microbial metabolism in diverse environments
pix01230
Biosynthesis of amino acids
Module
pix_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pix00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
RIN61_11010 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
RIN61_11010 (dapF)
Enzymes [BR:
pix01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
RIN61_11010 (dapF)
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Paralog
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Motif
Pfam:
DAP_epimerase
PhzC-PhzF
SPO11_like
Motif
Other DBs
NCBI-ProteinID:
WNN41802
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All DBs
Position
2458659..2459489
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AA seq
276 aa
AA seq
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MLLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDF
RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKGGIIELDVQNDGQISVDM
GPPRFNPAEIPFVADEQALNYPLEVDGQVHSIAALSMGNPHAVLRVDDVRTAPVHQLGPK
IENHPRFPQRVNAGFLQVIDRHRANLRVWERGAGETQACGTGACAAAVAAISQGWMDSPV
SLDLPGGRLHIEWAGPGKPVLMTGPAVRVYEGQVRL
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgcgttttaccaagatgcatgggctgggcaacgacttcatggtcctcgacctg
gtcagccagcacgcgcacatccagcccaagcacgccaagcaatggggtgaccgccacacc
ggcatcggcttcgaccagttgctgatcgtcgaggcaccgaacaacccggaagtggacttc
cgttaccgcatcttcaatgccgacggctccgaggtcgagcagtgcggcaacggtgcgcgc
tgcttcgcccgcttcgtgctggacaagcgcctgaccgcgaaaaagcgcatccgcgtggaa
accaagggcggcatcatcgaactggacgtgcagaacgacggccagatcagtgtcgacatg
ggcccaccgcgcttcaaccctgccgaaatccctttcgtcgccgacgagcaggcgctgaac
tacccactggaagtcgacggccaggtgcattcgattgccgccctgtccatgggtaacccg
catgccgtgctgcgtgtcgatgacgtgcgcaccgcccctgtgcaccagctgggcccgaag
atcgaaaaccatccacgcttcccgcagcgggtgaatgccggcttcctccaggtcatcgac
cgccaccgcgccaacctgcgcgtctgggaacgtggagctggcgaaacccaggcctgcggc
accggcgcctgcgccgccgccgtagcggcgatcagccagggctggatggactccccggtg
tccctcgacctgcccggtggccgcctgcacatcgaatgggccggccccggcaagcccgtg
ctgatgaccggcccagccgtacgcgtctacgaaggacaggttcgtctctaa
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