Pseudomonas inefficax: RIN61_14110
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Entry
RIN61_14110 CDS
T09811
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pix
Pseudomonas inefficax
Pathway
pix03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pix00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RIN61_14110 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pix03021
]
RIN61_14110 (rpoC)
03400 DNA repair and recombination proteins [BR:
pix03400
]
RIN61_14110 (rpoC)
Enzymes [BR:
pix01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RIN61_14110 (rpoC)
Transcription machinery [BR:
pix03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RIN61_14110 (rpoC)
DNA repair and recombination proteins [BR:
pix03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RIN61_14110 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
WNN37368
LinkDB
All DBs
Position
3161483..3165682
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINETVKERDGSVVKNTRIVDTTVGRALLFQVVPAGLPYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGTATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDREGKEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTDQGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVVVRSPINCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGMVRL
HNLKQVERADGNLVAVSRSGELAIADEFGRERERYKLPYGAVISVKEGDKVEAGAIVAKW
DPHTHPIVTELKGTVTFVGMEENITIKRQTDELTGLTNIEVLDVKDRPAAGKEIRPAIKM
VDASGKDLYLPGTDVPAQYFLPANALVGVADGAQIGVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEISESGDSSFIKGDQMELTQVLVENERLAAEDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgcatcggtctggcgtcgcctgaaatgatccgttcgtggtcgttcggtgaagttaagaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggcctgttctgcgccaag
atctttggcccagtcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgcggcgtgatctgcgagaagtgcggcgttgaagttgccttggcaaaagttcgtcgtgag
cgcatggcgcacatcgaactggcctcgcctgttgcccacatctggttcctgaagtcgctg
ccgtcccgtatcggcctgctgatggacatgaccctgcgtgacatcgagcgcgtgctctac
ttcgagagctacgtcgttatcgacccgggcatgaccactctggaaaagggtcagctgctg
aacgacgagcagtacttcgaagcgctggaagagttcggtgacgacttcgacgcccgcatg
ggtgccgaagctgtccgcgagctgctgcacgctatcgacctggagcacgagatcggtcgc
ctgcgcgaagagattccgcagaccaactcggaaaccaagatcaagaagctgtccaagcgc
ctgaagctgatggaagctttccagggctcgggcaacctgcctgagtggatggtcctgacc
gtcttgccagtgctgccgccggacctgcgtccgctggtaccgctggatggtggccgcttc
gcgacctccgacctgaacgacctgtatcgtcgggtgatcaaccgtaacaaccgtctgaag
cgcctgctggatctgtcggcgccggacatcatcgtgcgcaacgaaaagcgcatgttgcag
gaagcggtcgacgccctgctggacaacggccgtcgcggtcgcgccatcactggctcgaac
aagcgtccgctgaagtccctggccgacatgatcaaaggtaagcaaggtcgcttccgtcag
aacctgctcggtaagcgtgtggactactccggccgttcggtaattaccgtaggcccgacc
ctgcgtctgcaccagtgcggtctgccgaagaaaatggctctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggctgccaagaagatg
gtcgagcgcgagctgccagaggtgtgggacgtgctcgccgaggtgatccgcgaacacccc
gtgctgctcaaccgtgcaccgaccctgcaccgtctgggtatccaggcctttgaaccggtt
ctgatcgaaggtaaggccatccagctgcacccactggtctgcgccgcgtacaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgaccctggaagcccagctcgaagcg
cgcgcgctgatgatgtcgaccaacaacatcttgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgtggtactgggtctgtactacatgacccgtgaagccatcaatgcc
aagggcgaaggtcgcgtattcgccgacctgcaggaagtcgaccgcgtattccgcgccggc
gaggctgccctgcacgcgaaaatcaaggttcgtatcaacgaaaccgtgaaagagcgtgat
ggttccgtggtcaagaacacccgtatcgtcgacaccaccgtcggccgtgcgctgctgttc
caggttgtaccggcaggtctgccgtacgacgtggtcaaccagcctatgaagaagaaggcg
atctccaagctgatcaaccagtgctatcgcgtggttggtctgaaagagaccgtgatcttc
gctgaccagctgatgtacaccggtttcgcttactcgaccatttccggcgtttccatcggt
gttaacgacttcgttatcccggatgaaaaagcccgcatcatcggtaccgctaccgatgaa
gtgaaggagatcgagagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaggtcatcgacttgtggtcgaaggcgaacgacgaagtgtccaaggcgatgatggccaac
ctctcgaaagagaaggtcatcgaccgcgaaggcaaggaagtcgagcaagagtccttcaac
tcgatgtacatgatggctgactccggtgcgcggggttccgcagcccagatccgtcagctg
gccggtatgcgtggcctgatggccaagccggacggctccatcatcgagacgccgatcacg
gcgaacttccgtgaaggcctgagcgttctgcagtacttcatttcgacccacggtgctcgt
aagggtctggcggataccgcactgaagactgctaactccggttacctgactcgtcgtctg
gtagacgttgcccaggatctggtggttaccgagatcgactgcggcaccgaccagggcctg
ctgatgaccccgcacatcgaaggtggcgatgttgtagagccgctgggtgagcgtgtactg
ggtcgtgtcatcgcccgtgacgtgttcaagccaggcaccgaggacgtcatcgttccggcc
ggcaccttggtcgacgagaagtgggtagagttcatcgagctgaacagcatcgacgaagta
gtcgtgcgttcgccgatcaactgcgaaacccgctacggtatctgcgccaagtgctacggt
cgtgacctggctcgcggtcaccaggtgaacatcggtgaagctgtcggtgttatcgctgca
cagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgct
gcaagccgtacctcggctgccgacagcgtccaggtgaagaacggcggtatggtgcgtctg
cacaacctgaagcaggtagagcgtgccgatggcaacctggttgctgtatcgcgttcgggc
gagttggcgattgccgacgagttcggtcgtgagcgtgagcgctacaagctgccttacggt
gcggtgatttcggtcaaggaaggtgacaaggtcgaagctggcgccatcgtcgccaagtgg
gacccgcacacccacccgatcgttaccgagctgaaaggtaccgtgaccttcgtgggcatg
gaagaaaacatcaccatcaagcgtcagaccgacgaactgaccggtttgaccaacatcgaa
gtcctggacgtcaaggatcgccctgccgctggcaaggaaatccgtccggcaatcaagatg
gtcgatgcttctggcaaggatctgtatctgccaggtaccgacgtacctgcccagtacttc
ctgccggccaacgcccttgtcggtgtggctgacggtgcccagatcggcgttggtgacgtt
atcgcgcgtatcccgcaagaaacgtcgaagacccgtgacatcaccggtggtctgccgcgc
gttgccgacctgttcgaagcgcgccgtccgaaagaagcctcgattctggctgaagtcagc
ggcaccatcgcgttcggtaaagagaccaagggcaagcgtcgtctggtcatcactccgacc
gacggtagcgatccgtacgaagagctgattccgaagtggcgccacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggcccgagcgatccgcacgacatc
ctgcgtctgctgggtgtgagcgcgctggcgaagtacatcgtcaacgagatccaggacgtt
taccgtctgcaaggcgttaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgcaaggtcgagatctccgagtcgggcgattccagcttcatcaagggcgaccagatg
gaactgacccaggtactggtagagaacgagcgtctcgccgccgaggacaagttcgtctcc
aagttcacccgcgtgctgctgggtatcaccaaggcgtcgctgtcgaccgagtcgttcatc
tccgcggcttccttccaggaaaccacccgcgtactgaccgaagcggcggtaaccggcaag
cgcgattacctgcgcggcctgaaagagaacgtggtcgtgggtcgtctgatcccggccggt
actggtctggcctaccacagcgagcgcaagcgtcgccgtgatgccgacaagccgctgcgt
gtgagcgccagtgaggtggaagccgcactgaccgaagcgctgaactccagcggtaactaa
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