Pseudomonas inefficax: RIN61_15475
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Entry
RIN61_15475 CDS
T09811
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pix
Pseudomonas inefficax
Pathway
pix02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pix00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RIN61_15475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pix03021
]
RIN61_15475
Transcription machinery [BR:
pix03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RIN61_15475
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_ECF
Sigma70_r4
PhyR_sigma-like
HTH_23
HTH_11
HTH_7
HTH_38
HTH_29
HTH_DeoR
HTH_3
HTH_IclR
HTH_31
HTH_6
HTH_28
HTH_24
HTH_40
HTH_22
Motif
Other DBs
NCBI-ProteinID:
WNN37619
LinkDB
All DBs
Position
complement(3437995..3438510)
Genome browser
AA seq
171 aa
AA seq
DB search
MQINDTLKPTEVALLYQAHHSWLSGWLRSRVGCSEHAADLAQDTFVRLLRARQLSPLKEP
RAYLSSIARGLMIDQFRRRALERAYQESLAHLPEAEVPSEEDRLVILDTLARLDRALHQL
KPRARQAFLLAQLDGLSIVQIALRLGVSRATVERDLAKALGVCYRLRYADA
NT seq
516 nt
NT seq
+upstream
nt +downstream
nt
atgcagatcaacgacacgctcaagccgaccgaggttgctctgctctaccaggcccaccac
agctggctcagcggctggctgcgcagccgggtcggctgcagcgagcacgccgccgacctg
gcccaggataccttcgtgcggctgttgcgggcccgccagctgtcgccgctgaaggagcca
cgcgcctacctcagcagcatcgcccgtggcctgatgatcgaccagttccgccgccgtgcg
ctggaacgggcctaccaggaaagcctggctcacctgcccgaagccgaagtacccagcgaa
gaagatcgactggtcatcctcgataccctggcgcgcctcgaccgtgccctgcaccaactg
aaaccgcgtgcccgccaggcattcctgctggcccagctcgacggtttgagcatcgtacag
atcgccctgcgcctgggtgtatcgcgggccaccgtcgaacgcgacctggccaaggccctg
ggcgtctgctaccggttgcgctatgccgacgcctga
DBGET
integrated database retrieval system
