Pseudomonas inefficax: RIN61_17555
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Entry
RIN61_17555 CDS
T09811
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pix
Pseudomonas inefficax
Pathway
pix03030
DNA replication
pix03430
Mismatch repair
pix03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RIN61_17555 (dnaE)
03430 Mismatch repair
RIN61_17555 (dnaE)
03440 Homologous recombination
RIN61_17555 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pix03032
]
RIN61_17555 (dnaE)
03400 DNA repair and recombination proteins [BR:
pix03400
]
RIN61_17555 (dnaE)
Enzymes [BR:
pix01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RIN61_17555 (dnaE)
DNA replication proteins [BR:
pix03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RIN61_17555 (dnaE)
DNA repair and recombination proteins [BR:
pix03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RIN61_17555 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HROB
HHH_3
Motif
Other DBs
NCBI-ProteinID:
WNN38014
LinkDB
All DBs
Position
3894215..3897739
Genome browser
AA seq
1174 aa
AA seq
DB search
MSVPFVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAG
IKPICGADLWLAAADPEAPLSRICFLAMNPKGYRNLTELISRGWTDGQRNGLVILQRDWI
APASEGLIALSAGKEGDIGMALLAGKGDEAEALLRDWMGMFPERFYVEVQRTNRARDEEY
VHAAVALADKLGAPLVATNDVRFIKQSDFDAHETRVCIGEGWTLDDPRRPRMYSDQQYLK
SAEEMTELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGIDDYLRHVSHEGL
EERLAVLWPKETTPDYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPV
GPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDYV
AEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDVNIDFIPLDDRKTYE
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHPDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCANNNIDAELAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHH
PAAFMAAVLSADMHNTDKVVVLVEEVRNMKLRLDAPDVNFSDFKFTVNNDGRIVYGLGAI
KGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALIRSGALDRLGPHFHDE
IKAYQANIDINRATLLSALGEAIKSAEQAAHTADSGHVDLFGGMFEEADADVYANHRKVR
ELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIIDLKPSRETQTIAGMIIALRV
MKNKKGDKMGFVTLDDRSGRIEASLFADAFLAAQSLLQTDAMVVVEGEVSNDDFSGGLRL
RVKQVMTMEDARTKLAESLRLKVAHEALKGDRLKWLGELITRHRGACPITLEYTGSDAKA
MLQFGEQWAIDPADGLIQALRDQFGRENVFLQYR
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttcccttcgttcacctgcgcgtccactccgaattctcgctggtcgacggcctg
gtgcggatcaagccgctggccaaggcactggccgggatgaacatgccggcggtggcgatc
accgaccagagcaacatgtgctcgctggtaaagttctacaagaccgccatgggcgccggc
atcaagccgatctgcggcgccgacctgtggctggccgctgccgatccggaagcaccgctg
tcgcgtatctgcttcctggccatgaaccccaagggctaccgcaacctcaccgagctgatc
tcgcgcggctggaccgacggccagcgcaacggcctggtcatcctccagcgtgactggatc
gcccccgccagcgagggcctgatcgccctgtccgcaggcaaggaaggggacatcggcatg
gccttgctggccggcaagggcgatgaggccgaggccctgctgcgagactggatgggcatg
ttccccgagcgcttctatgtcgaagtgcagcgcaccaaccgcgcccgcgacgaggagtac
gtgcacgccgccgtggcgttggccgacaagctcggcgctccgctggtggcaaccaacgat
gtgcgcttcatcaagcagtcggacttcgatgctcacgaaacccgcgtgtgcatcggtgag
ggctggaccctcgacgacccgcgccggccaaggatgtacagcgaccagcagtatctgaag
tcggccgaggaaatgaccgagctgttcagcgacctgcccgacgccatcgccaacaccgtc
gagatcgccaagcgctgcaacatccaggtgcagctgggcaagtatttcctgcccgacttc
cccacgcccaacggcatgggcattgatgattacctgcggcatgtgtcccacgaaggcctg
gaagagcgcctggcagtgctgtggccgaaagagaccacgcccgattacgaagagaagcgc
caggtctatctcgaccgcctgaagttcgagctggacatcatcatccagatgggtttcccc
ggttacttcctgatcgtcatggacttcatcaagtgggccaagaacaacggcgtgccggtc
ggcccgggccgagggtcgggtgccggctcgctggtggcctacgtgctgaagattaccgac
ctcgacccgctggcctacgacctgctgttcgagcgtttcctcaaccctgaacgtatttcc
atgcccgacttcgacgtcgacttctgcatggatggccgggaccgggtgatcgactatgtg
gccgaagcctatggccgtaacgcggtcagccagatcatcaccttcggtaccatggcggcg
aaggcggtggtgcgagacgtggcgcgggtccagggcaaatcctacggcctggccgaccgt
ctgtcgaagatgatcccgttcgaagtgggcatgaccctggagaaggcctacgagcaggaa
gagatcctgcgcgacttcctcaagggtgacgaagacgcccgcgaaatctgggacatggcc
ctgaagctcgagggcgtgacccgcggtaccggcaagcacgccggtggcgtggtcatcgcc
ccgaccaagctcaccgacttttcgccgatcgcctgtgacgaagagggcggcggcctggta
acccagttcgacaaggatgacgtcgaggctgccggcctggtgaagttcgacttcctcggc
ctgcgcaccctgaccatcatcaagtgggcgatggagatcatcaaccgcgagcaggccaag
aagaacctgcccgatgtaaacatcgacttcatcccgctggacgaccgcaagacctacgag
ctgttgcagaaggccgaaaccacggcggtgttccagcttgaatcgcggggcatgaaagag
ctgatcaagaagctcaagcccgactgcctggaagaccttatcgcactggtggcgctgttc
cgcccaggcccgctgcagtcgggcatggtggacgacttcatcaaccgcaagcacggccgc
gccgagctcgcctaccctcaccctgactaccagtacgaaggcctgaagccggtgctggca
ccgacctacggcatcatcctgtaccaggaacaggtgatgcagatcgcccaggtaatggct
ggctacaccctcggtggcgctgacatgctgcgccgtgcgatgggtaagaagaagcccgag
gagatggccaagcagcggggtggtttcatcgaaggttgtgccaacaacaatatcgatgca
gagctggccggtaacatcttcgacctggtagaaaagttcgccggttacggcttcaacaaa
tcccactccgccgcctatggcctggtgtcgtaccagactgcctggctgaaaacccaccac
ccggcggcgttcatggctgctgtgttgtcggcggatatgcacaacaccgacaaggtggtg
gtgctggtcgaagaagtgcgcaacatgaagctgcgcctcgacgcgccggacgtgaacttc
tccgacttcaagttcaccgtgaacaatgacgggcgcatcgtctatggcctgggcgccatc
aagggcgtgggcgaaggcccggtggaggccatcgtcgaggcccgcgcgcagggtggcccg
ttcaaggacctgttcgatttctgtgagcgcatcgacctcaagcgggtcaacaagcgtacc
ctcgacgcactgatccgcagcggcgcgctggatcgtctgggcccgcacttccatgacgag
atcaaggcctaccaggccaacatcgacatcaaccgggcaaccttgctctcggcgctgggc
gaggccatcaagtctgccgagcaggctgcccacaccgctgacagtggccacgtcgacctg
ttcggcggcatgttcgaagaggcggatgccgacgtctacgccaaccaccgcaaggtgcgc
gaactcaccctcaaggaacgcctgaagggcgagaaggacacccttggcctgtacctcacc
ggccacccgatcgacgagtacgagaccgagattcgccgctttgcccgccagcgcatcatc
gacctcaagccgtcacgcgagacccagaccatcgccggcatgatcattgccctgcgggtg
atgaagaacaagaagggcgacaagatgggcttcgtcaccctggacgaccgttccgggcgc
atcgaggcgtcgctgtttgccgatgccttcttggcggcacagtccttgctgcagaccgat
gccatggtggttgtcgaaggcgaggtcagcaacgatgatttctccggtggcctgcgcctg
cgggtgaagcaggtgatgaccatggaggatgcgcgcaccaagctggccgaaagcctgcgc
ctgaaggtggcacacgaagcgctcaagggcgaccggctgaagtggctgggcgaactgatt
acccgccaccgcggcgcctgcccgatcaccctcgagtacaccggcagcgacgccaaggcc
atgctgcagttcggcgagcagtgggcgatcgacccggccgatgggctgattcaggcgctg
cgtgaccagttcgggcgtgagaacgtcttcctgcaatatcgttga
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