Pseudomonas inefficax: RIN61_24225
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Entry
RIN61_24225 CDS
T09811
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pix
Pseudomonas inefficax
Pathway
pix03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pix00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
RIN61_24225
09124 Replication and repair
03420 Nucleotide excision repair
RIN61_24225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pix03021
]
RIN61_24225
03036 Chromosome and associated proteins [BR:
pix03036
]
RIN61_24225
03400 DNA repair and recombination proteins [BR:
pix03400
]
RIN61_24225
Enzymes [BR:
pix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
RIN61_24225
Transcription machinery [BR:
pix03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
RIN61_24225
Chromosome and associated proteins [BR:
pix03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
RIN61_24225
DNA repair and recombination proteins [BR:
pix03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
RIN61_24225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
DUF7711
Helicase_C
CnrY
Motif
Other DBs
NCBI-ProteinID:
WNN39260
LinkDB
All DBs
Position
5386789..5389050
Genome browser
AA seq
753 aa
AA seq
DB search
MSYSVAVRALCEFSAKVGDLDLRFTPSPTAQEGIEGHRRVVARRGAGYESEIALEGQFQT
LKVRGRADGYDPACNRLEEIKTHRGDLSRQPANHRQLHWAQAKVYGWLMCQARQLPAIEV
ALVYLDVDSDGQTLISEHCTAAELQAFFETQCQRFLAWAQGQEQRLAERNQGLQALGFPY
PVFRQGQRQLAETLYKAASTGRCLMAQASTGIGKTLGTLFPLLKAMVPQQLDKLFFLTAK
TPGRALALDAMRQITGATPQPALRTLELIARDKACEHPDKACHGESCPLAAGFYDRLPAA
RAAAAALPLLDRAQLREVALAHQVCPYYLGQEMARWVDVLVADYNYYFDAHALLFGLTQA
NQWRVAVLVDEAHNLVERGRGMYSASLDQGQLLALRQSKPHGLTGALDRLNRQWNALYKE
QRAPYQASESLPDALLRALQQCIGLIQEQMNQAPAQVDPQVLQFFYQALQFSRVAELFDE
HFLFDISQRQGPRKRRLATLCLRNVTPARLLGPRMQAARSVTLFSATLSPRHFYSDLLGM
PADTAWLEVAAPFRAEQLEVRIASQVSTRYQQRQASLAPIVELIARQYERMPGNYLAFFS
SFEYLQQVAALLAERHAQIPMWAQEPGMDEAARQGFLDRFVADGRGVGFAVLGGAFGEGV
DLPGTRLIGAFVATLGLPQVNPVNEQFKQRLGRQFGAGFDYAYLYPGVRKVIQAAGRVIR
GDQDRGVLVLIDERFAEPRVQQMFPGWWPTPGG
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
gtgagctacagcgtggcggtacgcgccttgtgcgaattcagcgccaaggtcggtgacctg
gacctgcgcttcaccccatcacccaccgcccaggaggggatcgaagggcatcggcgggtg
gtggcgcgacgcggtgcgggctatgagtcggaaattgccctcgaaggccagttccaaacc
ctgaaggtgcgtggccgcgccgacggttacgaccccgcctgcaaccgcctggaagagatc
aagacccaccgtggcgacctgtcgcgccagccggccaaccatcgccagctgcactgggcg
caggccaaggtctatggctggttgatgtgccaggcaaggcaactgccggccatcgaggtg
gcgctggtttatcttgacgtcgacagcgatggccagacgctgatcagtgaacactgcacg
gctgccgaactgcaagccttcttcgaaacccagtgccaacgctttctggcttgggcacag
gggcaggagcagcgcctggccgagcgtaaccagggcctgcaagccctgggcttcccttat
ccggtgttccgccaaggccagcgacaactggcagaaaccctgtacaaggcggcgagcacc
ggccgttgcctgatggcgcaggccagtaccggaattggcaagaccctcggtacgttgttc
cccctgctcaaggccatggtgccgcagcaactggacaagctgttctttctcacggccaag
accccgggccgggccttggccctggatgccatgcgccagatcaccggcgccacgccgcag
ccggccttgcgcacgctggaactgatcgcccgcgacaaagcctgcgagcaccccgacaag
gcctgccatggcgagtcctgccccttggccgcaggcttctacgatcgcctgccggccgcg
cgcgcggcggcggcagcgttgccgctgctcgaccgcgcccagctgcgcgaagtggccctg
gcgcaccaggtgtgcccgtattacctgggccaggaaatggcgcgctgggtagatgtgctg
gtggcggactacaactactacttcgatgcccatgccttgttgttcggcctgacccaggcc
aaccagtggcgggtcgcggtgctggtggacgaggcgcacaacctggtcgagcgcggccgc
ggcatgtacagcgccagcctcgaccagggccagctgctggccctgcgccagagcaaaccg
cacgggctgaccggtgcgctggaccggctgaaccggcagtggaacgccctctacaaggag
cagcgtgcgccgtaccaggccagcgagtcgctgccagacgctttgctgcgtgccttgcag
caatgcatcgggctgattcaggagcagatgaaccaggcgcctgcgcaagtggacccgcag
gtgctgcagttcttctaccaggcgttgcagttcagccgggttgccgagctgttcgacgag
cacttcctgttcgacatcagccaacgccagggcccgcgcaagcggcggctggccaccctg
tgcctgcgcaatgtcaccccggcgcggctgttgggcccgcgcatgcaggcggcgcgcagc
gtgacgctgttttccgctaccctgagcccacggcatttctacagcgacctgctgggcatg
ccggccgataccgcctggctggaagtggctgcgccgttccgcgccgaacagctggaagtg
cgcatcgccagccaggtatccacccgttaccagcaacgccaggcttcgctggcgccgatc
gtcgagctgattgcccggcagtacgagcgcatgccgggcaactacctggcgttcttcagc
agtttcgagtacctgcaacaggtggccgcgctgctggccgaacggcatgcacagataccc
atgtgggcccaggagccgggcatggacgaagctgctcgtcagggctttctcgaccgtttt
gtggcggatggccgcggggtgggctttgcggtgctgggcggtgcattcggggagggggtg
gacttgccgggcacgcggctgatcggcgcgtttgtcgccaccctcgggctaccccaggtc
aacccggtcaacgagcagttcaagcagcgcctggggcggcagtttggtgcggggttcgat
tacgcctatctctacccgggcgtgcgcaaggtcatccaggcggcaggccgggtcatccgg
ggcgaccaggaccgtggcgtactggttctgatcgacgagcgcttcgccgaaccccgggtg
cagcagatgttccctgggtggtggccgacgccgggaggctag
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