Pseudomonas inefficax: RIN61_24465
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Entry
RIN61_24465 CDS
T09811
Symbol
xthA
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
pix
Pseudomonas inefficax
Pathway
pix03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RIN61_24465 (xthA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pix03400
]
RIN61_24465 (xthA)
Enzymes [BR:
pix01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
RIN61_24465 (xthA)
DNA repair and recombination proteins [BR:
pix03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
RIN61_24465 (xthA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
WNN39306
LinkDB
All DBs
Position
complement(5431288..5432100)
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AA seq
270 aa
AA seq
DB search
MKIVCFNINGLRARPHQLAALIEKHQPDVIGLQETKVSDDQFPLADVQALGYHVHYHGQK
GHYGVALLSRQAPLSLHKGFASDEEDAQRRFIWGTFADADGNPITIMNGYFPQGESRDHP
TKFPAKQRFYSDLQALLEGQFRNDQPLLVMGDMNISPQDCDIGIGPDNAKRWLKTGKCSF
LPEEREWMERLKGWGLVDSFRHLYPEVTDRFSWFDYRSRGFEDEPKRGLRIDLIMASQHL
VPRIKDAGVDYELRGMEKPSDHAPIWLELS
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcgtctgtttcaacatcaacggcttgcgggcccgcccgcaccagctggcggcg
ctgatcgaaaagcaccagccggacgtgatcggcctgcaggaaaccaaggtcagcgacgat
cagttcccgctggccgacgtgcaggcgctgggctaccacgtgcattaccacgggcagaaa
ggccactatggcgtggccctgctgtcgcgccaggcaccactgagcctgcacaagggcttt
gccagcgatgaggaagacgcccagcgccgcttcatctggggcaccttcgccgatgccgat
ggcaacccgatcaccatcatgaacggctacttcccccagggtgaaagccgcgaccacccc
accaagttcccggccaagcagcgtttctacagcgacctgcaggcgctgctggaaggccag
ttccgcaacgaccagccactgctggtgatgggcgacatgaatatctcgccgcaggactgc
gacatcggcatcggcccggacaacgccaagcgctggctcaagaccggcaagtgcagcttc
ctgccggaagagcgcgagtggatggagcgcttgaaaggctggggcctggtggacagtttc
cgccacctgtacccggaagtgaccgaccgcttcagctggttcgactaccgtagccgcggc
ttcgaggacgagcccaagcgcggcctgcgcatcgacctgatcatggcctcgcagcacctg
gtgccgcggataaaggatgcgggtgtggactatgaactgcgcgggatggaaaagccgtcg
gaccatgcgccgatctggctggaattaagctga
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