Pseudomonas inefficax: RIN61_26605
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Entry
RIN61_26605 CDS
T09811
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
pix
Pseudomonas inefficax
Brite
KEGG Orthology (KO) [BR:
pix00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pix03000
]
RIN61_26605
Transcription factors [BR:
pix03000
]
Prokaryotic type
Helix-turn-helix
Other families
RIN61_26605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
GAF
AAA_lid_14
PAS_4
AAA_5
PAS_9
HTH_30
AAA_2
PAS
HTH_1
HTH_28
HTH_7
HTH_29
HTH_22
AAA
HTH_20
HTH_23
Mga
HTH_50
AAA_16
HTH_11
AAA_7
HTH_17
AAA_22
PAS_8
Motif
Other DBs
NCBI-ProteinID:
WNN39714
LinkDB
All DBs
Position
complement(5912266..5914176)
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AA seq
636 aa
AA seq
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MARQLITNAHDPLHESRQARLKLASEGELPLGMLRDEIDASWRRSLGHGLDCLQGEQVGL
GLEQGHDLRMLLERNRLLVDAVTPELDYLVARQGKAGIVILGDAQANVLAIEGQKHVLQR
EGLRDLHPGSCWSESLRGTNAIGTAVVEGRPTLINCGEHYLDRLSPFSCTSVPLRDPRGE
VIGVLDITREGVMAQPQDSLSTLMLAAGNIESRMFGLCHPEQLVLAFHSRPQYLNSAWHG
LLALSLDGEVLAANDGACQLLQVPRHELLGRRSSDLLGERSPAFIARLWQGGVSSVQTAK
GEFYFRALQLPRHGRVNGSTPVSKPAPGKQSPALDALAGGDPRLARNLRMARQGLGNGLP
VLLLGETGTGKEVVARALHQASPRADKPFVAVNCAAIPEGLIESELFGYREGAFTGSRRG
GMVGRLMQAHGGTLFLDEIGDMPLALQARLLRVLQERRVAPLGAGDEQEIDVALICATHR
DLKRLVQEQHFREDLYYRVNGVSLRLPALRERDDLAAIIQGLLDKSDARGVTLDPALTAL
LEGFDWPGNIRQLEMVVRTALAMREDGEQVLTLDHLTDCLLDELASGTAPSGSLKDNELE
LIRGALARHQGNVSAAAEALGISRATLYRKLKQLRG
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgacaactaataacaaacgcccacgacccgctgcacgaatcccgccaggcccgc
ctcaagctggccagtgaaggcgagctgccgctgggcatgctgcgcgacgagatcgacgcc
tcctggcgccgcagcctgggccatggcctggactgcctgcagggcgaacaagtcggcctg
ggcctggaacagggccacgacctgcgcatgctgctggagcgcaaccggctcttggtcgac
gccgttaccccggaactggactacctggtcgcgcgccagggcaaggccggcatcgtcatc
ctcggcgatgcccaggccaacgtgctggccatcgaagggcagaagcacgtgctgcaacgc
gaaggcctgcgcgacctgcacccaggcagttgctggagcgagtcattgcgtggcaccaac
gcgatcggcacggcagtggtggaaggccggccgacgctgatcaactgcggcgaacattac
ctcgaccgcctcagcccgttctcctgcacttcggtacctctacgcgacccgcgcggcgag
gtgatcggcgtgctcgacatcacccgtgaaggggtgatggcgcaaccacaggacagcctg
tcgacgctgatgctggcggccggcaacatcgaaagccgcatgttcggcctgtgccacccg
gagcaattggtgctggccttccatagccgcccgcaatacctcaacagcgcctggcatggc
ctgctggcgctgagcctggacggtgaagtgctggctgccaacgacggtgcctgccagctg
ttgcaggtgccgcgccatgagctgttgggccggcgcagcagcgacctgctgggtgaacgg
tcaccggccttcatcgcccgcctgtggcagggcggggtgagcagtgtgcagacggccaag
ggcgagttctacttccgcgccctgcagctgccgcgccatggccgggtcaacggcagcacg
ccggtgagcaagccggcgccgggcaagcagtcacccgccctcgacgccctggccggtggc
gacccgcgcctggcgcgcaacctgcgcatggcccgccaggggctgggcaatggcctgccg
gtgctgttgctgggcgagaccggtaccggcaaggaagtcgtcgcccgggccctgcaccag
gccagcccgcgtgccgacaaaccgttcgtggccgtcaactgcgcggccatccccgaaggg
ctgatcgagtccgaactgttcggctaccgtgaaggtgcgttcaccggctcgcgccggggc
ggcatggtcggccggctgatgcaggcccacggcggcacgctgttcctcgacgaaatcggc
gacatgccgctagcgctgcaggcgcgcttgttgcgggtactgcaggaacggcgcgtggca
ccgctgggggcgggcgacgagcaggagatcgacgtggcattgatctgtgccacgcaccgt
gacctcaagcgcctggtgcaggagcagcacttccgtgaagacctttactaccgggtcaac
ggcgtgtcgctgcgcctgccggcattgcgcgagcgtgatgacctggcggcgatcatccag
gggctgctggacaagtccgatgcccggggcgtgaccttggacccggccctgaccgcgttg
ctcgaaggcttcgactggccgggcaacatccgccagctggaaatggtcgtgcgcaccgcg
ctggccatgcgcgaggacggcgagcaggtgctgaccctggaccacctcaccgactgcctg
ctggacgaactggccagcggcaccgcgccttccggcagcctcaaggacaacgagctggag
ctgatccgtggcgccttggcgcgccatcagggcaacgtgtccgcggcagccgaggcgctg
ggtatcagccgggccacgctgtaccgcaagctcaaacagttgcgcggctga
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