Pseudomonas izuensis: LAB08_R04910
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Entry
LAB08_R04910 CDS
T08555
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
piz
Pseudomonas izuensis
Pathway
piz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
piz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAB08_R04910 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
piz03019
]
LAB08_R04910 (rnr)
03016 Transfer RNA biogenesis [BR:
piz03016
]
LAB08_R04910 (rnr)
Enzymes [BR:
piz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LAB08_R04910 (rnr)
Messenger RNA biogenesis [BR:
piz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LAB08_R04910 (rnr)
Transfer RNA biogenesis [BR:
piz03016
]
Prokaryotic type
tRNA degradation factors
LAB08_R04910 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
TRAM_2
TRAM
OB_Dis3
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
BCX65884
LinkDB
All DBs
Position
555792..558428
Genome browser
AA seq
878 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILQHLADRGSPANREQLVEEFGLTTEDQIEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRISGHRDGFGFLVPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGMIVEVVSRAHESIVGRYFEEGGIGFVVADNPKIQQEV
LVTPGRNANAQIGQFVEVKITHWPTPRFQPQGDVVEVVGNYMAPGMEIDVALRTYDIPHV
WPDAVLKEAGKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEARPGKLRLFS
GGWKLYVAIADVSSYVKLGSALDAEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPQVDR
LAMVCEMTISKSGEMTDYCFYEAVIHSHARLTYNKVSAMLETPKATEARKLRGEYTDVVP
HLKQLYALYKVLLAARHVRGAIDFETQETRIIFGSERKIAEIRPTVRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPSPKDYQALLA
GIKDRPDFHLIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIHSKQDTPHVRRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCE
FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVRVMRVDLDERKIDFEMAEKTISAPIGRKKRGTEAAAPAALSTKTVAEPA
PAKTGRRPAKEKAVEAYRPSDAAAKNAEVRKSREMKKALLADAKSGGKAASGGKPGRSAP
DKAVGGKPAKPSKHRKGPPKAGSAPAKSGGARKPKAKS
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatatgaaaac
cccattcctagccgcgaactgatccttcagcatcttgctgatcggggttcgcctgctaac
cgcgaacaattggtcgaagagttcggcctgaccacagaagaccagatcgaagccctgcgc
cgccgcctgcgcgccatggagcgcgatgctcagctcatctatacccgtcgtggcacgtat
gcaccggtggacaagctcgacctgatcctgggtcgcatcagcggtcaccgtgacggtttc
ggcttcctggtgccggatgacggcagtgacgacctgttcatgagcccggcgcaaatgcgc
ctggtgttcgacggtgaccgtgccctggcccgtgtttccggcctggaccgtcgcggtcgc
cgtgaaggcatgattgtcgaagtcgtgtcccgcgctcacgagagcatcgtcggtcgttat
ttcgaagaaggcggtatcggtttcgtcgttgccgacaatccgaagatccagcaggaagtg
ctggtgacgccgggccgtaacgccaacgcccagatcggccagttcgtcgaagtgaagatt
acccactggccgacaccccgcttccagccgcaaggcgatgtggttgaggttgtgggtaac
tacatggcgccgggcatggaaatcgatgttgccctgcgcacctacgacattcctcacgtc
tggcctgatgccgtgctcaaggaagctggcaagctcaagccggaagtcgaagagaaagac
aaagagaagcgcatcgacctgcgtcatttgccgttcgtcaccatcgacggtgaagacgcc
cgcgacttcgatgacgcggtctactgcgaggcccggccaggcaagctgcgcctgttctcc
ggtggctggaagttgtacgtggcgattgccgacgtctccagctacgtgaaactcggttcg
gcactggatgccgaggctcaggttcgcggcaactcggtgtacttccccgagcgcgtgatt
ccgatgttgcctgagcaactgtctaacggtttgtgctcgctgaacccgcaagtcgatcgc
ctggccatggtttgcgagatgaccatctcaaaatccggcgaaatgaccgattactgcttc
tacgaagcggtgattcactcccatgcgcgcctgacctacaacaaggtcagtgccatgctc
gaaacgccgaaagcgactgaagcccgcaagctgcgcggcgagtacaccgacgtcgtgccg
cacctcaagcagttgtatgcgctgtacaaggtgttgctggccgcccgtcatgtgcgtggc
gcgatcgatttcgaaacccaggaaacccggatcatcttcggctccgagcgcaagatcgcc
gaaatccggccgaccgtgcgcaacgatgcgcacaagctgatcgaggaatgcatgctggcg
gccaacgtggccactgccgaattcctgaaaaagcacgagattccggcgctgtaccgtgtt
catgacggtccgccaccggaacgtctggaaaaattgcgtgccttccttggtgagctcggc
ctgtccctgcacaaaggcaaggatggcccgtcgccgaaggactaccaggcactgctggcc
ggtatcaaggatcgtccggatttccacctgatccagaccgtcatgctgcgttctttgagc
caggcggtgtacagcgccgataaccagggtcacttcggcctgaattacgaggcgtacacg
cacttcacttcgccgattcgccgctacccggacttgcttacgcaccgggcgatccgcagc
gtcatccattcgaagcaggatactccgcacgttcgccgtgccggtgcgatgaccattccg
aaggcgcgcatctatccgtacgacgaagcggccctggagcagctcggcgagcagtgctcg
atgagcgagcgtcgtgccgacgaagcgacccgcgacgtggtgaactggctcaagtgcgag
ttcatgaaagaccgcgtcggcgagtcgttcccgggcgtgatcacggctgttaccggtttt
ggtctgttcgtcgagctgaccgacatttatgtcgaaggcctggtgcacgtcaccgcgctg
ccgggtgactactaccacttcgaccctgtgcaccatcgcctggccggtgagcgcaccggt
cgcagcttccgtcttggcgatactgttgaagtgcgtgtcatgcgtgtcgacctcgacgag
cgcaagattgacttcgagatggccgaaaaaaccatcagcgcgccgatcggtcgcaaaaag
cgtggaacggaagcggcagcacctgcggccctctctacaaaaacagtcgcagaaccggct
ccggcgaaaaccggtcgtcgtcctgccaaagaaaaggctgtcgaagcctatcgtccgagc
gatgcagcggcgaaaaacgccgaagtgcgcaaaagccgtgaaatgaaaaaggccttgctg
gccgacgcgaaaagcggcggtaaagcggcgtctgggggaaagcccggacggtcggcgcct
gacaaggctgtcggcggcaagccagccaaaccgagcaaacatcgtaaaggtccgccaaaa
gcgggctcggccccagccaaaagtggcggggcgcgtaaacctaaggccaagtcatga
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