Pseudomonas izuensis: LAB08_R06470
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Entry
LAB08_R06470 CDS
T08555
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
piz
Pseudomonas izuensis
Pathway
piz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
piz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LAB08_R06470 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
piz03400
]
LAB08_R06470 (recB)
Enzymes [BR:
piz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LAB08_R06470 (recB)
DNA repair and recombination proteins [BR:
piz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LAB08_R06470 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
AAA_25
AAA_12
Motif
Other DBs
NCBI-ProteinID:
BCX66035
LinkDB
All DBs
Position
734737..738426
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AA seq
1229 aa
AA seq
DB search
MTGKTPLALAFPLRGSQLIEASAGTGKTFTISALYLRLVLGHGGEDSGFGRELLPPQILV
VTFTDAATKELRERIRTRLAEAARFFREETPAPDGLIAELREQYLPEQWSGCANRLDIAA
QWMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSDLLGEVLRDYWRLFCYPMQGD
ALNWVRNNWGGPAALLPRVRGLFASERDNVEGKEPAELITECLQERRAALLELKMPWRQW
ANELLAICHEGVTSKSVDGRKMQSRYFEPWFEKIKAWAEDETLEQLDIGTGFTRLTPDGM
AEAWKKGDVPNHPGLDAMPGLKACLDGLPTPDAAVLKHAAHWVGARFEEEKRRRAEMGFD
DMLLRLDAALQAEGGERLASLIREQFPVALIDEFQDTDPVQYRIFESIYRIEDNNPESGL
FLIGDPKQAIYAFRGADIYTYLRARQATAGRLHTLGTNFRSSHGMVNAVNHVFERAETRE
AGRGAYLFRESNGDNPVPFLPVESQGRKEVLHIDGQVVPALNIWHLSAEQPLSGAVYRQQ
LAAACASEITALLNGGQQGRAGFVRDGDFKGLLPADIAILVRDGKEAQAVRAELSARGVR
SVYLSDKDSVFAAQEAHDVLTWLKACAEPDIERPLRAALACITLDLSLAELERLNQDELA
WEARVMQFRRYREIWRKQGVLPMLRCLLHDFQLPQALIARNDGERVLTNLLHLCELLQQA
AAELDGEQALIRHLSEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVFLPFI
CSAKPVDGSRLPLHYHDAMGKAQVTLSPTAELIALADDERLAEDLRLLYVALTRAQHACW
LGVTDLKRGSNNSSVLHLSALGYLLGGGAALTEPAGLKRWLEDLQQDCPALSYSEMPEAT
GEHYHPPQNEAALRAPLVPKRKASENWWIASYSALRMSDILSIGSDEAPESPQAQKLFDD
ERLDPQAPREMAAGGADIHRFPRGPNPGTFLHGLLEWAGDEGFSATPQAVEDAIARRCNR
RGWEGWITTLSDWLQHLLKSPLPVGAGQTPVIFERLTQYRVEMEFWFASHKVDVLKLDAL
VREHTHNGVARVAAEPVLLNGMFKGFIDLTFEHEGRYYVADYKSNWLGIDDSAYTGQAME
QSILDNRYDLQYVLYLLALHRQLKARLADYDYDRHVGGALYLFLRGTRAPSQGVYFARPP
RELIERLDRLFQGKAEPKAEPAWEQGVLL
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgaccggcaaaacacctttggccctggcatttccgctgcggggcagccaactgatcgaa
gccagcgccgggacgggcaagactttcaccatttctgcgctgtatctgcgcctggtccta
ggccatggtggcgaggacagtggtttcggacgcgagctgttgcctccgcaaatccttgtc
gtgacctttaccgatgccgccaccaaagaattgcgtgagcgaattcgtacccgtctggcg
gaagccgcccgttttttccgcgaggaaacaccggcccccgatggcctgattgccgaactg
cgtgagcagtacttgcctgaacaatggtccggttgcgcaaaccgcctggacatcgccgcc
cagtggatggatgaagcggcggtttcgacgatccacagttggtgccagcgtatgctgcgc
gaacacgcattcgacagtggcagcttgtttacccagaccctggaaaccgatcacagcgat
ttgctcggggaagtcctgcgcgactactggcggctgttttgttatccgatgcaaggcgat
gcgctgaattgggtgcgtaacaattggggtggtccggcggcattgttgccacgggttcgc
ggcctgtttgccagcgagcgggacaacgtcgaaggcaaggagcctgctgaactgatcacg
gagtgtttgcaggagcggcgggctgcgctactggaactcaagatgccctggcgtcaatgg
gcgaatgagttgctcgccatctgccatgagggtgtcaccagcaagagtgtcgacggccgc
aagatgcagtcgcgttacttcgaaccctggttcgagaagatcaaagcctgggccgaggac
gaaacccttgagcaactggacatcggaaccggcttcacgcgcctgacccccgacggcatg
gctgaagcctggaagaaaggcgatgttcccaatcatccaggcctggacgccatgcctggc
ctgaaggcctgtcttgatggcttgccgacgcctgacgctgccgttttaaaacacgccgcc
cattgggtgggtgcacgcttcgaggaagaaaaacgccgccgcgcggaaatgggtttcgac
gacatgcttttgcgcctcgatgctgccttgcaagccgagggtggcgagcgcctggcaagc
ttgatccgtgagcaatttccggtggcgctgatcgacgagtttcaggataccgacccggtg
cagtaccggatcttcgagagcatctatcgcatcgaggacaacaatccggaaagcggcctg
ttcctgatcggcgacccgaagcaggcgatctatgccttccgcggtgccgacatctacacc
tacctgcgcgcccgtcaggcgaccgctggccgcctgcataccctgggcaccaacttccgt
tcgagtcatggcatggtcaacgccgtaaaccatgtctttgagcgcgccgagactcgtgag
gccggacggggggcctacctgttccgtgaaagcaatggcgataacccggtaccgtttttg
ccggtcgaatcccagggccgcaaagaggttttgcacatcgacggtcaggtggtgcccgcg
ctgaacatctggcacttgtctgccgagcagccgttgtccggtgcggtgtaccggcaacag
ctggccgccgcgtgtgccagtgaaatcaccgcattgctcaacggtgggcaacaaggtcgt
gcggggttcgtacgggacggcgacttcaaaggcttgctgccggcggatatcgcgatcctg
gtccgcgatggcaaggaagcgcaggccgtacgtgccgagctttccgcccggggagtgcgc
agcgtttatctgtcggacaaggattcggtgttcgccgcccaggaagctcacgacgtgctg
acctggctcaaagcctgcgccgagccggatatcgaacgaccactgcgggccgcattggcc
tgcatcacactggacctgtcgttggcggagctggaacggctcaatcaggacgagttggcc
tgggaagcgcgggtcatgcagttccgccgttatcgagagatctggcgcaagcagggcgtg
ttgcccatgttgcgatgcttgctgcatgacttccaactgccacaggcactgattgcacgc
aacgatggcgagcgggtgttgaccaaccttttgcatctctgcgagttactgcaacaggcg
gccgccgaactggatggcgaacaggctctgatccgtcatttgtccgagcatctggcgctg
tccggtcaggccggcgaagagcagatcctgcgtctggagagtgatgaacaactggtcaag
gtcgtgaccatccacaagtccaaggggctggaatatcccttggtgtttctgccgttcatt
tgctcggcgaaaccggtggatggcagtcggttgccgctgcattaccacgatgccatgggc
aaggctcaggtgaccttgagcccgaccgccgagttgattgccctggccgatgatgaacga
ctggcggaagacctgcgcttgctctatgtggccctgacccgcgcgcagcatgcctgctgg
ctgggggtgacggacctgaaacgcggcagtaacaacagctcggtgctgcacctgtcggcg
ctgggttacctgctgggcggcggcgcggccttgaccgagccggcggggttgaagcgttgg
ctcgaagacttgcagcaggactgccctgcactgagttacagcgaaatgcccgaagccacg
ggcgagcactaccatccgccgcaaaacgaagcagcattgcgcgcgccgctggttcccaag
cgcaaggccagcgaaaactggtggatcgcctcctacagcgccttgcgcatgagcgacatt
ctgagcatcggcagtgacgaggcgccggagagcccgcaggcgcagaagctcttcgacgac
gagcgtctcgatccgcaggcgcctcgggaaatggctgcgggtggcgccgatatccatcga
ttcccccgtggcccgaaccccggcacctttcttcatggcttgctcgaatgggcgggcgac
gaaggtttttctgccacgccgcaagccgtggaggacgccatcgcccgtcgttgcaaccgt
cgtggctgggaaggctggatcaccacgctgagcgattggctgcagcatctgctcaaatca
ccgctgcctgtgggagctgggcaaaccccggtgattttcgagcgcctgacccaataccgg
gttgaaatggaattctggttcgccagccataaggtcgatgtactcaagctcgatgcgttg
gtgcgcgaacatacgcacaatggagttgcccgggtggccgccgagccggtgctgctcaat
ggcatgttcaagggctttatcgacctgacgttcgaacacgagggccgctactacgtcgct
gactacaaatccaactggctgggcattgatgactcggcctacaccgggcaggccatggaa
cagtcgatcctcgacaaccgctacgacctgcaatacgtcttgtaccttctggccctgcat
cgtcaactcaaggcccggcttgccgattacgactacgaccggcatgtcggaggtgcgttg
tacctgttcctgcgcggtacgcgtgcacccagccagggcgtgtattttgcccgtccgccg
agggagctgatcgagcgactggaccgactgtttcaggggaaagcagaaccgaaggccgaa
ccggcatgggaacagggagtattgctatga
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