Pseudomonas izuensis: LAB08_R07110
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Entry
LAB08_R07110 CDS
T08555
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
piz
Pseudomonas izuensis
Pathway
piz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
piz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAB08_R07110 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
piz03019
]
LAB08_R07110 (pnp)
03016 Transfer RNA biogenesis [BR:
piz03016
]
LAB08_R07110 (pnp)
Enzymes [BR:
piz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LAB08_R07110 (pnp)
Messenger RNA biogenesis [BR:
piz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LAB08_R07110 (pnp)
Transfer RNA biogenesis [BR:
piz03016
]
Prokaryotic type
tRNA degradation factors
LAB08_R07110 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
S1_2
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
BCX66097
UniProt:
A0ABM7RT29
LinkDB
All DBs
Position
808702..810807
Genome browser
AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV
AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAAKPTWTWAPQAEA
TELLGAIRSEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQPSAADVKAAFGE
IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaaaaaattccagttcggtcagtcgaccgttaccctcgagactggc
cgtatcgcccgtcaggcctccggcgcagtattggtcaccgttgacgacgacgtcagcgta
ttggtgaccgtagtcggtgccaaacaagccgatccgggcaagggtttcttccctctgtct
gttcactaccaggaaaagacttacgctgccggtaagatccctggcggtttcttcaagcgt
gaaggccgtccttccgagaaagaaaccctgacttcccgactgatcgaccgtccgatccgt
ccgctgttccctgaaggcttcatgaacgaagtgcaggttgtctgcaccgtcgtttccacc
agcaagaagaccgatccggacatcgctgcgatgatcggtacctcggctgccctggccatc
tccggcattcctttcgatggtccgatcggcgctgcccgcgttgccttccacgaaagcacc
ggctacctgctgaacccgacttatgagcaactggctgcttcgagcctggacatggtcgtt
gccggtacttcggaagccgttttgatggttgaatcggaagccaaagagctgaccgaagac
cagatgctgggcgccgtactgttcgctcacgacgagttccaggctgttatccaggccgtc
aaagagctggccgccgaagctgccaaaccaacctggacttgggctccgcaagccgaagcc
accgaactgctgggcgctatccgctccgagttcggcgaagcgatctcccaggcctacacc
atcaccgtcaaggccgaccgttacgctcgcctgggcgagttgaaggatcaggtcgttgcc
aagctgtccggtgaagaaggccagccttctgctgctgacgtcaaagcggctttcggcgaa
atcgaataccgcaccgttcgcgaaaacatcgttaacggcaagccacgtatcgacggtcgc
gacacccgcaccgtacgtccgctgaacatcgaagtcggcgttctgccgaagacccacggt
tcggcactgttcacccgtggtgaaacccaggctctggtagtcgcgactctcggcaccgcc
cgtgacgcacagctgctggacaccctggaaggcgagaaaaaagacccgttcatgctgcac
tacaacttccctccgttctcggtgggcgagtgtggtcgcatgggtggcgctggtcgccgc
gaaatcggtcacggccgtctggcccgtcgttcggttcaggccatgctgccagccgctgac
gtgttcccgtacaccattcgcgttgtatcggaaatcaccgaatccaacggttcgagctcc
atggcttccgtttgcggtgcttccctggcgctgatggacgctggtgtgccaatgaaggca
ccggttgccggtatcgccatgggcctggttaaagaaggcgagaaattcgccgtcctgacc
gacatcctgggcgacgaagaccacctgggcgacatggacttcaaggtagccggtaccgcc
aagggtgtgaccgcgctgcagatggacatcaagatcaagggcatcaccgaagaaatcatg
gaaatcgctctgggccaagccctggaagcgcgcctgaacatcctcggtcagatgaaccag
atcattggccagtcgcgtaccgaactgtcggccaacgcaccgaccatgatcgcgatgaaa
atcgacaccgacaaaatccgtgatgtcatcggtaaaggcggcgcgaccattcgtgcgatc
tgcgaagaaaccaaggcttcgatcgacatcgaagacgacggttcgatcaagatcttcggc
gaaaccaaggaagcggctgaagctgcacgtcagcgcgttctgggcatcaccgccgaggcc
gagatcggcaagatctacgtcggtaaggttgagcgcatcgtcgacttcggcgcattcgtt
aacatcctgcctggcaaggacggtctggttcacatctcgatgctgagcgacgctcgcgtt
gagaaagtgaccgacatcctgaaagaaggccaggaagtggaagtgctggtactggacgtg
gacaaccgcggccgtatcaagctgtccatcaaagacgtagccgcagccaaggcttcgggc
gtttaa
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