Pseudomonas izuensis: LAB08_R13010
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Entry
LAB08_R13010 CDS
T08555
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
piz
Pseudomonas izuensis
Brite
KEGG Orthology (KO) [BR:
piz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
piz03016
]
LAB08_R13010 (rnd)
Enzymes [BR:
piz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
LAB08_R13010 (rnd)
Transfer RNA biogenesis [BR:
piz03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LAB08_R13010 (rnd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
BCX66681
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All DBs
Position
1447419..1448552
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AA seq
377 aa
AA seq
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MAIDIHWIRDNDSLGRFCAEWQQLPYVALDTEFMRVDTFYPIAGLLQVGDGMRAYLIDPL
TIDNWQPLAALLENPAVVKVLHACSEDLEVLLRLTGSLPASLFDTQLAAAYLNLGFSMGY
SRLVQEVLGIDLPKGETRSDWLQRPLSETQISYAAEDAVHLAELFVQLRPKLSDDKYAWV
LEDGAELVANLRRETDPYEVYRDAKLAWKLSRAQLAVLRELCAWRETEARARDLPRNRII
REHSLWPLARTQPDNLGALAKIEDMHPRTVRQDGEFLLGLIKRAGSVSPDQWPPAVPEPL
PVDAAALLKRMKAIGQAEAERLNIAPELMLRKKTLEALLKSGFPNGPYQLPESLRGWRRE
LMGQALLDSLATAGEQP
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgatattcactggattcgcgacaacgatagcctcggccggttttgcgccgag
tggcagcagttgccatacgttgccctcgacaccgaattcatgcgggtcgacaccttctat
ccgatcgccggcctgctgcaggtgggcgatggcatgcgcgcctacctcatcgatccgctg
accatcgacaactggcagcctctggccgcgttgctggaaaacccggcagtggtcaaagtc
ctgcatgcctgcagcgaagaccttgaagtcctgctgcgcctgactggcagcctgccggca
tcgttgttcgacacacaactggccgccgcttacctgaacctgggtttttccatgggctat
tcgcggctggtgcaggaagtgctcggcattgacctgcccaagggcgaaacccgttccgac
tggctccaacgtccgctttccgaaacccagatcagttacgccgctgaagacgccgtgcac
cttgcggagcttttcgtacagctgcgtccgaagctgtctgacgacaaatatgcatgggtc
ctggaagacggcgccgaactggtcgcaaacctgcgccgcgagactgacccgtacgaggtc
tatcgcgacgccaagctggcctggaaactgtcgcgcgcccaacttgccgtgctgcgtgaa
ctctgcgcctggcgcgagacagaggcacgcgcccgtgacctgccgcgcaaccgtatcatc
cgcgagcattcgctgtggccactggcgcgcacgcaaccggacaacctcggcgcattggcg
aaaatcgaagacatgcacccgcgaaccgtacgtcaggacggtgagtttttgcttggtctg
atcaagcgcgctggcagtgtatcgcctgatcaatggccacccgctgtgccggagccattg
ccggtggacgccgcggcgctgctcaagcggatgaaagccatcggccaggccgaggctgag
cgcctgaacatcgcgccagagctgatgctgcgcaagaaaaccctggaagcgctgctcaaa
agcggcttccccaacggtccctaccaattgcctgaatcgctgcgtggctggcgccgcgag
ctgatgggccaggcgctgctggacagcctggccaccgccggagaacagccttga
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