Pseudomonas izuensis: LAB08_R13690
Help
Entry
LAB08_R13690 CDS
T08555
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
piz
Pseudomonas izuensis
Pathway
piz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
piz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LAB08_R13690 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
piz03019
]
LAB08_R13690 (rne)
03009 Ribosome biogenesis [BR:
piz03009
]
LAB08_R13690 (rne)
Enzymes [BR:
piz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LAB08_R13690 (rne)
Messenger RNA biogenesis [BR:
piz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LAB08_R13690 (rne)
Ribosome biogenesis [BR:
piz03009
]
Prokaryotic type
rRNA processing factors
LAB08_R13690 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
BCX66745
UniProt:
A0ABM7RLW2
LinkDB
All DBs
Position
complement(1513977..1517189)
Genome browser
AA seq
1070 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIR
QVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREC
LEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQ
RLRDDSPEAATNQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPTEVV
APVAAPVAAPEPSLFKGLVKSLVSLFASKEEPAAPVVVEKPAAERPARNEERRTGRQQSR
NRNGRRDEERKPREERAPREERAPREPREERQPREVREVREETPAVAREERAPRPPREER
APRAPREDRKPRGEREERVRELREPLDATPAAATAAAAATEERPARQPREERAPRPPREE
RQPRAEQAAAAVAEEELPTNEEQLQEEGQDGAEGDRPRRRSRGQRRRSNRRERQRDANGN
VIEGSDESESGEGSEAPSTADLAAGLAVTAAVASSVISAPAEAQANEQAERATAATQETA
PVETPVVEATTPVEATASPEIELAAAPEVQPVVEAAAEPAIVVEAPAVAAEPVIETVTEA
VREVREEQTAFNWVAEPAVAEAPAPAAEAEVAEAMVSEPVVAAAEPAPAVEAPVVAQAPA
PVAETAPVSALTPSGRAPNDPREVRRRKREAERLQKEAELAAAAAPAEEVVAAEPAPVVA
DVVEAAPAPAAEVAAEPAETVIHEAPRSVQEAVEQHEQAKEKEHEPKPLA
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagatggccagcgc
ctctacgacctggacatcgaatccggtgcacgcgagcagaagaaggccaacatctataaa
ggccggatcactcgcatcgaaccaagccttgaagctgcctttgtcgatttcggctctgag
cgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaagcccccgaa
ggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgttcaggtcgaa
aaagaagaacgtggcaacaagggtgcagccctgaccactttcatcagcctggccggtcgt
tacctggtactgatgccgaacaacccgcgtgccggcggcatctcccgtcgcatcgaaggc
gaagagcgcaatgaactgcgcgaagccctgaacggcctggttgccccggccgacatgggt
ctgatcgtgcgcactgccggcctgggccgcagcagcgaagaaatgcagtgggacctcgat
tacctgctgcaactctggaccgccatcaaagaagcgtcgctggatcgttccgcgccattc
ctgatctaccaggaaagcaacgtgatcatccgcgccatccgcgattacctgcgccaggac
atcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgaccttcatccgc
caggtcatgccgcagtacgccagcaagatcaagctgtacgaagacagcgttccgctgttc
aaccgtttccagatcgaaagccagatcgaaaccgccttccagcgcgtcgtcgaactgcct
tccggcggctccatcgttatcgatccgaccgaagccctggtgtccatcgacatcaactcg
gcgcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaaccttgaagcc
gccgaagaaattgcccgtcagttgcgcctgcgtgacatcggcggcctgatcgtcatcgac
ttcatcgacatgacccctgccaagaaccagcgcgccgtggaagagaaagtccgcgaatgc
ctggaagccgaccgcgctcgcgtgcaagtcggccgtatctcgcgcttcggcctgctggaa
atgtcccgtcagcgcctgcgcccatccttgggtgaaagcagcggcatcgtttgcccgcgc
tgcagcggcaccggcatcatccgtgatgtcgaatcgctgtcgctggcgatcctgcgcctg
atcgaagaagaagccctgaaagaccgcaccgccgaagttcgcgcccaggtgccgatcccg
gtggccgcgttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaactgcgcacc
cgcgcccgcatcgtcattctgccgaacgaccacctcgaaacgccgcatttcgaagttcag
cgtctgcgcgatgacagcccggaagccgccaccaaccagtccagctacgaaatcgccgct
gccgctgccgaagtggaagaagtccagccagccgctgcgacccgcaccctggttcgccag
gaagccgcggtcaagacagctccggcccgcgccaatgctccggttccgaccgaagtcgtc
gctccggttgccgcaccggtcgccgcgccagagccaagcctgttcaaaggcctggtgaaa
tcgctggtcagcctgttcgcctccaaggaagagcctgccgctccggtcgtggttgaaaaa
ccggctgccgagcgtcctgcccgcaacgaagagcgtcgcaccggtcgtcagcagagccgc
aaccgtaatggtcgccgcgatgaagagcgcaagcctcgcgaagaacgtgcaccgcgcgaa
gagcgcgcaccacgggaaccacgcgaagagcgccagcctcgcgaagtccgcgaagtccgc
gaagaaacgccagcagtcgctcgtgaagaacgcgctccacgtccaccgcgtgaagaacgt
gcaccgcgtgctccacgtgaagatcgcaagccacgtggcgagcgtgaagagcgtgtacgc
gaactgcgcgaacctctggatgccactccagccgctgctacggctgccgctgctgctacc
gaagaacgcccagcccgccagccacgcgaagaacgtgctccacgcccaccgcgtgaagag
cgtcaaccgcgtgccgagcaagcggcagctgccgttgccgaagaagaactgccaaccaac
gaagagcaactgcaggaagagggtcaggacggcgccgaaggcgatcgcccacgccgtcgt
tcccgtggccagcgtcgtcgcagcaaccgtcgcgagcgtcagcgtgatgccaatggcaac
gtcatcgaaggttcggatgagtccgagtccggcgaaggcagcgaagcaccaagcacagcc
gatctggccgccggcctggctgttaccgcagccgttgccagctccgtgatcagcgctccg
gccgaagcacaagccaacgagcaagccgaacgcgccactgccgctacccaggaaacggct
ccggtcgaaacaccggtcgtcgaagcgacaacgccggttgaagccactgcatcgccggaa
atcgaactggcagcagcgcctgaggtacagcctgtggttgaagctgccgccgagcctgcc
atcgtcgtcgaagcacctgccgtggctgcagaacctgtgatcgaaaccgtgactgaagcc
gttcgcgaagttcgcgaagagcaaacggcattcaactgggttgccgagccagctgttgcc
gaggcaccggcacctgccgctgaagccgaagtggctgaagcgatggtctccgagccagtg
gttgccgctgccgaacctgctccggcagtcgaagcgccggttgtcgcccaagcgcctgct
ccagtggccgaaaccgcccctgtcagcgccctgacgccgagcggccgtgcgccgaacgat
ccacgtgaagtgcgtcgtcgcaagcgtgaagccgagcgtctgcagaaggaagccgaactg
gctgccgctgctgctccggcggaagaagttgtcgctgccgagccggcaccggttgttgct
gacgtggtcgaggcagcacctgccccggctgccgaagtcgctgccgagcccgctgaaacc
gtgatccacgaagccccgcgctccgttcaggaagcggtagagcaacacgaacaggccaag
gaaaaagaacacgagcctaaaccgctcgcctga
DBGET
integrated database retrieval system
