Pseudomonas izuensis: LAB08_R26480
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Entry
LAB08_R26480 CDS
T08555
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
piz
Pseudomonas izuensis
Brite
KEGG Orthology (KO) [BR:
piz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
piz03032
]
LAB08_R26480
03400 DNA repair and recombination proteins [BR:
piz03400
]
LAB08_R26480
Enzymes [BR:
piz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LAB08_R26480
DNA replication proteins [BR:
piz03032
]
Prokaryotic type
DNA Topoisomerases
LAB08_R26480
DNA repair and recombination proteins [BR:
piz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LAB08_R26480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
BCX68008
LinkDB
All DBs
Position
complement(2943661..2944680)
Genome browser
AA seq
339 aa
AA seq
DB search
MPDALPPDLHYVDDTRPGITRRKLRGKFGYFDPTGQRITDPAEIQRINALAVPPAYTDVW
ICADPRGHLQATGRDARGRKQYRYHPRWREVRDSDKYSRLRDFGLALPKLRKQLEALLAA
PGFSRDKVMATVITLLDATLIRVGNTQYARDNRSYGLTTLRSRHVEINGSAIRFQFRGKS
GVEHQITVKDRRLARIIKRCQDIPGQDLFQYLDENGERHTITSADVNTCLQTLTGADFTA
KDYRTWAGSALALAVLRKLQWQPESEAKRHVVEMVKNVARQLGNTPAVCRKCYIHPAVLE
CFHLGALADLPRPRTRKGLRAEEVGLAMLLEKLASEPTN
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgcccgatgcgctgccacccgacctgcattacgtcgatgacacccggcccggaatcacc
cgcaggaaactgcgtggcaagttcggctatttcgacccgaccggtcagcggattaccgat
cctgccgaaatccagcgcatcaacgcactcgcagtgccgccggcctacaccgacgtatgg
atctgcgccgacccgcgcgggcatctgcaagccaccggccgcgacgcgcgcggtcgcaag
cagtaccgttaccatccgcgctggcgcgaagtgcgcgacagcgacaagtactcacgcctg
cgggatttcggcctggccctgccgaaactgcgtaaacagctggaggccttgttggcagca
ccgggcttcagccgcgacaaggtcatggccactgtcatcaccttgctcgatgccacgctg
atccgtgtcggcaacacccaatacgcccgggacaaccgctcctacggcctgaccaccttg
cgcagccgtcatgtggagatcaacggcagtgcgatccggttccagtttcgcggcaaaagc
ggtgtcgaacatcagatcaccgtgaaggacaggcgcctggcgcggattatcaagcgttgc
caggacatccccgggcaagatctcttccaatacctcgatgaaaacggcgagcgacacacc
atcacatccgctgacgttaatacctgcctgcaaaccctgaccggtgccgacttcaccgcc
aaggactaccgcacctgggccggcagtgccctggcgctggcggtgttgcgcaaactgcag
tggcaaccggaatcggaggcgaaacggcatgtggtggagatggtgaaaaacgtcgcccgg
cagttgggcaataccccggcggtgtgccgcaaatgctatatccatccggcggtgctcgag
tgctttcatctgggcgcactggccgatctgccccggccaagaacgcgtaaaggcttgcgg
gccgaagaggtcgggctggcgatgttgctggagaaactggcgtctgaaccgacgaattga
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