Pseudomonas izuensis: LAB08_R48640
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Entry
LAB08_R48640 CDS
T08555
Name
(GenBank) OprD family porin
KO
K18093
imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-]
Organism
piz
Pseudomonas izuensis
Pathway
piz01501
beta-Lactam resistance
piz02020
Two-component system
Module
piz_M00745
Imipenem resistance, repression of porin OprD
Brite
KEGG Orthology (KO) [BR:
piz00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LAB08_R48640
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
LAB08_R48640
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
piz02000
]
LAB08_R48640
01504 Antimicrobial resistance genes [BR:
piz01504
]
LAB08_R48640
Transporters [BR:
piz02000
]
Other transporters
Pores ion channels [TC:
1
]
LAB08_R48640
Antimicrobial resistance genes [BR:
piz01504
]
Gene sets
beta-Lactam resistance modules
Imipenem resistance, repression of porin OprD [MD:
M00745
]
LAB08_R48640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OprD
Motif
Other DBs
NCBI-ProteinID:
BCX70197
LinkDB
All DBs
Position
5453867..5455198
Genome browser
AA seq
443 aa
AA seq
DB search
MRVMKWSMIALAVAAAASTQLAVAAPFVSDQAEAKGFVEDSKLDLLVRNYYYNRNKKDGA
TDDRDWTQGIQGMFSSGYTQGLIGVGVEAWGQLAIKLDGSDKYAGSGNMTVGNDGEVNNS
QGKAGAAAKFRISKTELKVGDMQPSTAPVFAVGGSRILHQTASGIQLQSSEVKDLDLEGG
HFYSATSQDSNARNGDLWANYAGVQANSIDYLGGKYGITPDLSVSLYGAKLEDIWNQYYA
NANYTLALGGDNSINFDGNIYNTRDTGSAKAGEINNTAYSLAAAYSFLKAHTVTLGFQKV
NGDTPFDYVGVGKNNRGGDSIFLANSIQYSDFNAPGEKSVQVRYDLKMAEYGVPGLSFMT
RYVKGWDIDGTNTPAGSAYTGFYGEDGKHHETNVEAKYVVQTGPAKDLSFRIRQAWHRAN
HDDAFEGSVDEFRLIVDYPLSVL
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgtgatgaagtggagcatgatcgcactggcagttgcagcagcagccagtactcag
ttggcagtagccgcacctttcgtaagcgaccaggcagaagccaaaggtttcgttgaagac
agcaagctggacttgctggttcgcaactactactacaaccgtaacaagaaagacggcgca
accgacgacagagactggacccaagggatccagggcatgttcagctcgggctacacccaa
ggtctgatcggtgttggcgttgaagcttggggtcaactggccattaaactggacggttcc
gacaaatatgccggctcgggcaacatgaccgttggcaatgatggcgaagtcaacaacagc
cagggcaaagccggcgctgccgccaagttccgcatctccaagaccgagctgaaagtcggc
gacatgcagccaagcactgctccagtgttcgctgttggcggctcccgtatccttcaccaa
actgccagcggtatccaactgcagagcagtgaagtcaaagatctcgacctcgaaggcggc
cacttctactcggcgaccagccaggacagcaacgcccgtaacggcgacctgtgggctaac
tacgctggcgtgcaagccaactccatcgactacctcggtggcaagtacggcatcaccccg
gacctgagcgtttcgctgtacggcgctaaactggaagacatctggaaccagtactacgcc
aacgcgaactacaccctggcactgggtggcgacaactcgatcaacttcgacggtaacatc
tacaacacccgggacaccggtagcgctaaagcaggcgaaatcaacaacaccgcctactcg
ctggccgctgcttactcgttcctgaaagcacacaccgtcaccctgggcttccagaaagtg
aatggcgatactccgttcgactatgtcggcgtgggtaaaaacaaccgcggtggcgactcg
atcttcctcgccaactccatccagtactctgacttcaacgccccaggcgagaaatcggta
caagtccgttatgacctgaaaatggccgaatacggcgtacctggtctgagcttcatgacc
cgttacgtgaaaggttgggacatcgacggtaccaacactccagcgggcagcgcctacacc
ggcttctacggtgaagatggcaagcaccacgaaaccaacgttgaagccaagtacgtcgtt
caaactggcccagctaaagatctgtccttccgtattcgtcaagcatggcaccgcgccaac
catgacgacgcgttcgaaggtagcgttgacgagttccgtctgatcgtcgactacccgctg
tcggttctgtaa
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