Pseudomonas izuensis: LAB08_R48830
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Entry
LAB08_R48830 CDS
T08555
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
piz
Pseudomonas izuensis
Pathway
piz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
piz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
LAB08_R48830 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
piz03400
]
LAB08_R48830 (sbcB)
Enzymes [BR:
piz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
LAB08_R48830 (sbcB)
DNA repair and recombination proteins [BR:
piz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
LAB08_R48830 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LAB08_R48830 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LAB08_R48830 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
BCX70216
UniProt:
A0ABM7RWR7
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All DBs
Position
complement(5475922..5477352)
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AA seq
476 aa
AA seq
DB search
MTSIFWYDYETTGINPRCDRPLQMAGLRTDFDLNEIDEPVNLYCQPSDDILPHPAACAIT
GITPVRLSEQGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYARE
WQGGNSRWDLIDVVRAAYALRPDGITWPTDDEGRVTLKLERLTAANGIDHGNAHEALSDV
RATIALARLIREKQPKLYDWLFQLRSKQKVLDQIRLLQPMVHVSGRFSAARHYVGVVLPL
AWHPKNKNALIVCDLHLDPQGLLDLDAEALRQRLYTRRDELAEGELPVPLKLIHINKCPV
VAPLSVLRPQDQQRLGLDMALYQQRALRLSDAPTVWQDKVQGIYAREEFASSEDPEQQLY
DGFIGDRDRRLCEQVRTADPQQLAQAHWPFDDERLPELLFRYRARNFPNTLSFDEQERWR
IFCQKRLSAPEWGAPNTLESFIEAAAQLTLTATSFQQEVLEQWQVYIQDLRKRLNL
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
gtgacctccatcttctggtacgactatgaaacgacgggcatcaacccccgttgcgatcgc
ccactgcaaatggcggggctgcgtactgacttcgatctcaatgaaatagacgagccggtc
aacctctattgccagcccagtgacgacatcctgccgcacccggcggcctgtgcgattacc
ggcattacacctgtccgcttgtctgagcaaggcttgagcgaagccgatttcatgacccgg
gtacatgcccaactggcggctccgggcacctgcggcgcgggatataacaccttgcgtttc
gacgacgagatgacccgctacagcctgtaccgcaactttttcgatccctatgcgcgggaa
tggcagggcggcaacagtcgctgggacctgatcgatgtggtgcgtgccgcgtatgccttg
cgccctgacggaattacctggccaacggatgacgaggggcgggtgacgctcaagcttgaa
cgcctgacggccgccaacggtatcgatcacggcaatgcccacgaagcgctgtcggatgtt
cgcgctaccatcgccctggcgcggttgattcgggaaaaacagccgaagttgtatgactgg
ctatttcagttgcgcagcaagcaaaaggtgctggatcagatccgcctgctgcaacccatg
gtgcatgtgtccgggcgtttttccgcggcacgtcattacgtcggcgtggttttgcctttg
gcatggcacccgaagaacaagaacgccttgattgtctgtgacctgcacctcgatccgcag
ggcctgctggacctggacgccgaagccctgcgccagcgcttgtacacccgtcgcgatgag
ctggccgagggtgaattaccggtgccgctcaaacttattcacatcaataaatgtccggta
gtggcaccgttgtccgtacttcgcccgcaagatcagcagcgtctggggctggatatggcg
ctgtatcagcagcgtgcactgcggctaagtgacgcgccaacagtctggcaagataaagtt
cagggaatttacgcccgcgaggagtttgcctccagcgaggaccctgaacagcagttatac
gatggttttatcggcgaccgcgatcgacggctatgcgaacaagtccgaacggccgacccg
cagcaattagcgcaagcgcattggcctttcgatgacgaacgtttgcctgaattattgttt
cgatatcgcgcacgcaactttcccaatacgttgagtttcgacgagcaagagcgttggcga
atattctgtcagaaacgtttgtcagcccctgagtggggagcgcccaataccctggaaagt
ttcatagaggccgcagcccaattgacccttactgcgacatcgtttcagcaagaggtgctt
gagcaatggcaggtgtatatccaggacttgcgcaaacgtttgaatctttga
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