Pseudomonas izuensis: LAB08_R49870
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Entry
LAB08_R49870 CDS
T08555
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
piz
Pseudomonas izuensis
Pathway
piz03410
Base excision repair
piz03430
Mismatch repair
piz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
piz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LAB08_R49870 (recJ)
03430 Mismatch repair
LAB08_R49870 (recJ)
03440 Homologous recombination
LAB08_R49870 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
piz03400
]
LAB08_R49870 (recJ)
DNA repair and recombination proteins [BR:
piz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LAB08_R49870 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LAB08_R49870 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LAB08_R49870 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BCX70320
LinkDB
All DBs
Position
complement(5587832..5589541)
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AA seq
569 aa
AA seq
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MRIEPRLLPDTLPFLGDIPPLLTRLYAARGVQSEAELDKSLARLIPYQQLKGIDAAVDLL
VIALEQRQRILIVGDFDADGATASTVGTLGLRLLGAAHVDYLVPNRFDYGYGLTPEIVAV
ALERQPHLLITVDNGISSVEGVAAAKKAGLNVLVTDHHLPGDELPLADAIVNPNQPGCAF
PSKALAGVGVIFYVLMALRARLRSLGWYESKPQPNIGELLDLVALGSVADVVPLDANNRI
LVHQGLERIRAGRARPGIKAILEVAKRDHARITSTDLGFIVGPRLNAAGRLDDMSLGIEC
LLTEDAGLAREMAAQLDGMNQDRKSIEQGMQREALAQLKDLPVESMPFGLCLFDPEWHQG
VIGILASRMKERYFRPTIAFADAGDGLLKGSGRSVQGFHIRDALSVVAAQHPNLITKYGG
HAMAAGLTLPEANFPLFAEAFDAEVRRQMREEDLTGRLLSDGTLAVEEFHLELARALRHA
GPWGQHFPEPLFHGVFQLVEQRVVGERHLKVVLRSECGSVKLDGIAFGIDRDIWPNPTIK
WVELAYKLDVNEFRGNETVQLMIAHIEPR
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcgaacctcgcctgctgcccgataccctgccattcctcggtgatattccacct
ctgttgacccgcctgtacgcggcgcggggcgtgcagtccgaagccgaactggacaaaagc
ctggcgcggttgattccgtaccagcagctcaagggcatcgatgccgcggtggatttgctg
gtgatcgcgctggagcaacggcagcgaatcctgatcgtcggcgatttcgatgccgacggc
gccacggccagtaccgtggggacgctgggcttgcgtctgctgggcgctgcgcatgtcgac
tacctggtgcccaaccgattcgactacggctacggcctgacgccggaaatcgtcgcggtg
gcgctggagcgccagccacacttgttgattaccgtggataacggcatttccagcgtcgaa
ggcgtagcggcggcgaaaaaggccgggctcaacgtgttggtcaccgatcaccacttgccc
ggtgatgaactgcctttggccgatgccatcgtcaatccgaaccagcccggttgcgcattt
ccgagcaaggcgctggccggtgtcggggtgattttctatgtactgatggccttgcgcgcg
cgcttgcgcagcctgggttggtacgaaagcaagccgcagccgaatatcggtgaattactt
gatctggtggccctggggagcgtggccgacgtggtgccgctggatgccaacaaccgtatt
ttggtgcatcagggcctggagcggattcgcgccggacgtgcccgacctggcatcaaggcg
attctcgaagtggccaagcgtgaccatgcgcgcatcacctcgaccgatctggggttcatt
gtcggcccgcgcctgaacgcggcggggcgtctggatgacatgagcctgggcatcgaatgc
ctgctcaccgaagatgccggcctggcccgggaaatggccgcgcagctggacggcatgaac
caggaccgcaaatccatcgagcagggcatgcagcgtgaagccctcgctcagctcaaggac
ttgccggtggaatcgatgccgttcggtttgtgcctgttcgatcccgagtggcaccaaggt
gtcatcggtatcctggcgtcgcgtatgaaagagcgatatttccgtccgaccatcgccttt
gccgatgccggagacggcctgctcaagggctcggggcgttcagtccagggctttcatatt
cgcgatgccctgagcgtggtggcggcgcagcatccgaacctgatcaccaagtacggtggc
catgccatggccgccggcctgacgctgccggaagcgaactttcccttgttcgccgaagcc
tttgatgccgaagtgcgtcgccaaatgcgcgaagaagacctgaccgggcgcctgctctcg
gacggtactttggcggtcgaggagtttcacctggaactggcccgtgcactgcgccatgcc
ggcccctgggggcagcacttcccggaaccgctgtttcacggggtgtttcaactggtcgag
cagcgcgtggtcggcgaacggcacctgaaggtggtgctcagaagtgagtgcggctcggtc
aagctcgatggcatcgcttttggtatcgaccgcgatatctggccgaatccgaccatcaaa
tgggtggaattggcctacaagctcgacgtcaacgagtttcgtggcaatgagaccgtccaa
ctgatgattgcccacatagaaccgcgttga
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