Pseudomonas izuensis: LAB08_R54350 Help Entry LAB08_R54350      CDS       T08555                                  Name (GenBank) DEAD/DEAH box helicase   KO K03724   ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] Organism piz  Pseudomonas izuensis Brite KEGG Orthology (KO) [BR:piz00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:piz03400]     LAB08_R54350 Enzymes [BR:piz01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.4  DNA 3'-5' helicase      LAB08_R54350     5.6.2.6  RNA 3'-5' helicase      LAB08_R54350 DNA repair and recombination proteins [BR:piz03400]  Prokaryotic type   Other factors with a suspected DNA repair function    DNA helicases     LAB08_R54350 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DEAD_assoc WH_Lhr WH4_Lhr DEAD Helicase_C WH3_Lhr ResIII Cas3-like_C_2 AlkZ-like HTH_IclR MarR Fe_dep_repress GntR DprA_WH HTH_Crp_2 HTH_24 LexA_DNA_bind AAA_22 PhoH Motif Other DBs NCBI-ProteinID:  BCX70757 LinkDB All DBs Position 6067273..6071577 Genome browser AA seq 1434 aa AA seqDB search MNLPIPADSALNGFHPAVSAWFSNTFATATAAQARAWPLIRQRRSTLIAAPTGSGKTLTA FLAVIDDLVHRGLETDNGLPDETLVVYVSPLKALSNDIQINLQNPLAGITEQLRVMGLPE LQITTAVRTGDTPQKDRSAMRKTAPHILVTTPESLYVLLGSDSGRKMLGTTRTVIVDEIH AIAASKRGSHLALSLERLQALCAEPLVRIGLSATQKPIEAVSRFLAGRDRDCEIIDIGHA RPRDLSIEVPPVPLSAVMANDVWELVYDRLAALAREHRTTLIFVNTRRLAERLSRHLSER LGKDAVAAHHGSLAKEFRLDAEQRLKRGDLQVLIATASLELGIDIGDVDLVCQIASPRSI AGFLQRVGRSGHQVGGTPKGRLFATTRDDLIECAALLDCVRRGELDTLQIPLAPLDVLAQ QIIAEVSCQEWPEDALLARFRQASPYATLDEKHYQALLHMLAEGYNGRLGIRSAYLHRDA VSRTLRGRRGAKLTAVTSGGTIPDNADYSVLLEPQGLNIGSVNEDFAVESIAGDVFQLGN TSYRILRVETGRVRVEDAQGQPPTIPFWLGEAPGRSAELSFAVARLQAQLDELLGATPGN LRPALDWLTETLGLNLASAEQLVEYLARARQTLGALPSRDTLLMERFFDESGGTQLVIHT PYGSRINRAWGLALRKRFCRTFNFELQAAASEDAIVLSLSTSHSFELDEVWRYLHSNSAE HTLIQAVLDAPLFGVRWRWNAGVALALPRYSGGRKVPPQIQRMKSEDLIASVFPDQIACV ENLAGEREIPDHPLVEQTLDDCLHEAMDSEGWLALLRRMERGEIRLISRDLPAPSPLAAE ILSARPYTFLDDAPLEERRTQAVLNRRWSDPQSTDDLGALDADAIAAVAEEAWPTPNGID EMHEALMSLACITEAEVRANPNWLDWLKTLADSGRACCINQSLWLARERLTCLRAIYPQA DLSPALEALRGFDEPWETEDAVLELIRARLSAFGPLPLPEIAEPLGLAPAQVTQALAQLE REGYVLRGHFTPGTAEEEWCERHLLARIHRYTVKRLRREIEPVALQDFMRFLFDWQHLSS TTQGQGSTILQAIVAQFEGYPAAASAWDSDILPARLKDYSPTWLDDLCRSGKLVWTRLTA HNKGASSALRSTPIVLLPRNRVGLWSDLTEQTPVNELSPKTQKVYEALHQHGALFFDELV HEAHVLRTELEIALQELVGAGRVNADSFAGLRALITPASKRQNRSSRRGRGAFIGGMDDA GRWALLRRGSPAPIVDNPRPAPTPAETLEHIAMTLLRRYGVVFWRLLEREADWLPSWREL LRTFHRLEARGEIRGGRFVSGLAGEQFALPEAIPLLREVRRRPHDGSLIAVCGVDPLNLA GTLLPGAKVPALASNRLVYRDGLPVAAEIAGKQQFWLDLDEQVMAEVRSKLIRH NT seq 4305 nt NT seq  +upstreamnt  +downstreamnt atgaacctgcccatccccgcagacagtgccctgaacggcttccatcctgccgtcagcgcc tggttcagcaataccttcgcgacggccaccgccgcccaggccagggcatggccgctgatc cgccagcgccgctcgaccctcatcgccgcgcccaccgggtccggcaagactttaaccgca tttcttgcggtcattgatgatctggttcaccgcgggctggaaaccgacaatggcctgccc gacgaaaccctggtggtctacgtgtcgccgctcaaggcgttgtccaatgacatccagatc aacctgcaaaacccgttggccggcatcaccgaacaactgcgcgtgatgggcctgcccgaa ttgcaaatcaccaccgccgtgcgcaccggcgacaccccgcaaaaagaccgttcggcgatg cgcaagactgcgccgcacattctggtcaccaccccggagtcgctctatgtcttgctcggc tccgactctggccgaaaaatgctcggcaccacgcgcacggtgatcgtcgacgaaatccac gccatcgcagccagtaaacgcggcagccatctggccctgagcctggaacgcttgcaggcg ctctgcgccgagccgctggtgcgcattggcctgtcggctacgcaaaaacccatcgaagcg gtctcgcgctttctggcaggtcgcgaccgcgattgcgagatcatcgacatcggccacgcc cggccacgggacctgagcattgaggttccgcccgtaccgttgtcggcggtgatggccaat gatgtgtgggagctggtttacgaccgcctcgccgccctcgcccgcgaacaccgcaccacg ctgattttcgtcaacacccgacgcctcgccgagcgcctgagccggcatctgagcgagcgc ctgggcaaggacgccgtagccgcccaccacggcagcctggccaaggagtttcgcctggac gccgagcaacggctcaagcgcggtgacctccaagtgctgatcgccacggcgtcgctggaa ctgggcatcgacatcggcgatgtcgacctggtgtgccagatcgcctcgccgcgctcgatt gccgggtttctgcaacgggtcggacgctccgggcaccaggtcgggggaacgcccaagggc cgcttgttcgccaccacccgcgacgacctgatcgaatgcgccgcgctgctcgattgtgtg cgccggggcgagctggacaccttgcagatcccgctggcgccgctggacgtactggcgcag cagatcatcgccgaggtcagttgccaggaatggccggaagacgctttgcttgcccggttc cgccaggcttcgccctacgccacgcttgacgagaagcactatcaggcgctgctgcacatg ctcgcggagggctacaacgggcgcctgggcatccgcagtgcctacctgcaccgcgatgcc gtgagccgcacgctgcgcgggcggcgcggcgccaaactgacggccgttaccagtggcggg accattcccgacaacgccgactacagcgtattgctggaaccccaggggctgaacatcggc agcgtcaacgaagactttgccgtggaaagcattgccggcgacgtgttccagttaggcaat acctcgtaccgcatcctgcgggtggaaaccggcagggtccgggtcgaggatgcccagggg caaccgccaaccattccgttctggctcggtgaagcgccagggcgcagtgcagaattgtcg tttgccgtcgcgcgcctgcaagcacaactcgatgaactgctgggcgctacaccaggcaac ctgcgaccggccctcgattggctgaccgagacccttggcctcaatctcgccagcgccgaa caactggtcgaatacctggcccgcgcccgccagaccctcggcgctttgccgtcccgggac acgttgctgatggagcggtttttcgacgagtccggtggcacccaactggtcatccatacg ccgtacggcagccgcatcaaccgtgcctggggcctggccttgcgcaagcgtttttgccgc accttcaacttcgagttgcaggctgccgccagtgaagacgccatcgtgctgtcgttgtcc accagtcacagttttgaattggacgaggtctggcgttacctgcacagcaacagtgccgaa cacacgctgatccaggccgtgctcgatgcgccgctcttcggcgtgcgctggcgctggaat gccggcgtggccctagcattgccgcgctactccggtggacgcaaggtaccgccgcagatc cagcggatgaaaagcgaagacctgatcgccagcgtgttccccgaccagatcgcctgcgtg gaaaacctcgccggcgaacgggaaattcccgaccatccgttggtggaacagaccctcgac gattgcctgcacgaggccatggacagcgaaggctggctggcgttgttgcggcgcatggaa cggggcgaaatccgcctgatcagccgcgacttgccggcgccctcgccgctggccgcggaa attctcagtgcccgcccctacacgtttctcgacgatgcgccgctggaagagcgccgcacc caggcggtgctcaatcgccgctggagtgaccctcaatccaccgacgacctcggcgcgctg gacgccgacgccatcgccgccgtggctgaagaagcctggccgacgcccaacggcatcgat gaaatgcacgaggcgctgatgagcctggcgtgcatcaccgaggccgaagtgcgggcgaat ccgaactggctcgactggctgaaaaccctggccgacagcggccgcgcctgttgcatcaat caatcgctatggctggcgcgagagcggctgacctgcctgcgggccatttatccacaggct gatttgagtcccgcgctggaagctttgcgggggtttgatgaaccctgggaaacggaggac gccgtactggagctgattcgcgcacggctcagcgcatttggcccattgccgctgccggaa atcgccgaaccgctcggattggcgccagcccaggtcacacaggcactggcgcaattggag cgcgaaggttatgtgctgcgcggtcacttcaccccaggcaccgccgaagaggaatggtgc gaacggcatttgctggcgcggattcatcgctacacggtcaagcgtctgcggcgggaaatc gagccggtggcgttgcaggatttcatgcggtttctgttcgactggcagcatctgtccagc accacccagggccaaggcagcacgatattgcaagcgatcgtcgctcagttcgagggctat cccgccgccgcatccgcctgggacagcgacattctgccggcgcggctcaaggactattca cccacttggctggatgatctgtgtcgcagcggcaaactggtctggacccgccttaccgcg cacaacaaaggcgccagcagcgcactgcgcagcacgccgattgtgttgttgccgcgtaat cgcgtcgggttgtggagcgacttgaccgagcagacgccggtcaacgaactgtcgcccaaa acccaaaaagtctacgaagcactccaccagcatggcgcgctgtttttcgatgagctggtg catgaagcgcatgtgttgcgtacagaactggagatcgccctgcaggaattggtgggcgcc ggacgggtgaatgccgacagcttcgccggcctgcgcgcgctgatcaccccggccagcaaa cggcagaatcgcagcagccgtcgtggacgcggggcattcatcggcggcatggacgatgcg gggcgctgggccttgcttcgacgcgggtcgccagcgccgattgtggataacccgcgtccg gcacccacacccgccgagacgctggaacacatcgccatgaccttgctgcgccgatacggc gtggtgttctggcgtctgcttgagcgcgaggcggactggctgccgagctggcgtgaactg ctgcgcacctttcatcggctggaagcgcggggcgagattcgtggcggacgttttgtcagt ggcctggcgggcgagcaatttgcgctgcccgaagcgataccgttgctgcgtgaagtgcgg cggcgaccccatgacggcagcctgattgcggtgtgcggggttgatccgctgaacctggcc ggcactctgctgcccggcgcgaaagtgccggcgctggcgagcaatcggctggtgtatcgc gatggattgccggtggctgccgagattgctggcaagcagcagttctggctggatttggat gagcaggtcatggctgaagtgcgtagtaaattgatccgacattga

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