Pseudomonas izuensis: LAB08_R54830
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Entry
LAB08_R54830 CDS
T08555
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
piz
Pseudomonas izuensis
Pathway
piz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
piz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LAB08_R54830 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
piz03021
]
LAB08_R54830 (rpoB)
03400 DNA repair and recombination proteins [BR:
piz03400
]
LAB08_R54830 (rpoB)
Enzymes [BR:
piz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LAB08_R54830 (rpoB)
Transcription machinery [BR:
piz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LAB08_R54830 (rpoB)
DNA repair and recombination proteins [BR:
piz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LAB08_R54830 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
IniB
Motif
Other DBs
NCBI-ProteinID:
BCX70805
UniProt:
A0ABM7RY49
LinkDB
All DBs
Position
complement(6113370..6117443)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEEVLDAFYTTNVFHVKGET
LSLELVPQRLRGEIAVLDIQDDKGKVIVEQGRRITARHINQLEKAGIKELDVPLDYVLGR
TTAKVIVHPATGEILAECNTELNTEILAKIAKAGVVRIETLYTNDIDCGPFVSDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
DALVTDEIVFLSAIEEADHVIAQASATMNDKKVLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVRKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKSQLDE
IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQDITDEVLDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMVEEQRKVAELRKFLHEIYNEIGGRQESLDDFSDQEILDLAQNLRGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMQLTDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccgtacctcctggccatccagctggattcgtatcgtgaattcttgcaa
gcgggagcgactaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtacgtcggatatcgtctgggc
gaaccggcatttgatgtcaaagaatgcgtattgcgcggtgtaacttacgccgtacctttg
cgggtaaaagtgcgcctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgaaaacggtaccttc
gtaatcaacggtaccgagcgtgtaatcgtttcccagctgcaccgttccccgggcgtgttc
ttcgaccacgaccgtggcaagacgcacagctccggcaaactgctgtactccgcgcgcatc
attccttaccgcggttcgtggctggacttcgagttcgacccgaaagactgcgtattcgtg
cgtatcgaccgtcgtcgcaagctgcctgcctcggtactgctgcgcgcgctgggctatacc
actgaagaagtgctggacgcgttctataccaccaacgtattccacgtgaagggcgagacc
ctgagcctggagctggtgcctcagcgcctgcgcggtgaaatcgctgtcctcgatattcag
gatgacaaaggcaaggttattgtcgagcaaggtcgtcgtatcaccgctcgccacatcaac
cagctggaaaaagccgggatcaaagagctggatgtgcctctggactacgtcctgggtcgc
acaaccgccaaggtcatcgtgcatccggcaaccggcgaaatcctggcagagtgcaacacc
gagctgaacaccgagatcctggcgaaaattgccaaggccggcgttgttcgcatcgaaact
ctgtacaccaacgatatcgactgcggtccgttcgtctccgacaccttgaagatcgactcc
accagcaaccaactggaagcgctggtcgagatctatcgcatgatgcgtcctggcgagccg
ccaaccaaagacgctgccgagaccctgttcaacaacctgttcttcagccctgagcgctat
gacctgtctgcggtcggccggatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtgctgtgcaaggaagacatcgtcgcggtactgaagaccctggtcgacatc
cgtaacggtaaaggcatcgtcgatgacatcgaccacctgggtaaccgtcgtgttcgctgc
gtaggcgaaatggccgagaaccagttccgcgttggcctggtacgtgttgagcgtgcggtc
aaagagcgtctgtcgatggctgaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccagtggctgcggcggtgaaagagttcttcggttccagccagctgtcccagttcatg
gaccagaacaacccgctgtccgagatcacccacaagcgtcgtgtttctgcactcggccca
ggcggtttgactcgtgagcgcgcgggctttgaagttcgtgacgtacacccgactcactac
ggtcgcgtatgcccgattgaaacgccggaaggcccgaacatcggtctgatcaactccctg
gccgcctatgcgcgcaccaaccagtacggtttcctcgagagcccgtaccgcgtggtgaaa
gacgctctggtcaccgatgagatcgtgttcctgtccgccatcgaagaagccgatcacgtg
atcgctcaggcttcggccacgatgaacgacaagaaagtcctgatcgacgagctggtagct
gttcgtcacctgaacgaattcaccgtcaaggcgccggaagacgtcaccttgatggacgtt
tcgccgaagcaggtagtttcggttgctgcgtcgctgattccgttcctcgagcacgacgac
gccaaccgtgcgttgatgggttcgaacatgcagcgtcaagctgtaccgaccctgcgtgct
gacaagccgctggtaggtaccggcatggagcgtaacgtagcccgtgactccggcgtttgc
gtcgtggctcgtcgtggcggcgtgatcgactccgtcgacgccagccgtatcgtggttcgt
gttgccgatgacgaagttgaaaccggtgaagccggtgtcgacatctacaacctgaccaaa
tacacccgctccaaccagaacacctgcatcaaccagcgtccgctggtgcgtaagggtgat
cgggttcagcgtagcgacatcatggccgacggcccgtccaccgacatgggtgaactggcg
ctgggtcagaacatgcgcatcgcgttcatggcatggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgtggttcaggaagaccgcttcaccacgatccacatccaggaa
ctgacctgtgtggcgcgtgacaccaagcttggcccagaggaaatcactgcggacatcccg
aacgtgggtgaagctgcactgaacaagctggacgaagccggtatcgtttacgtaggtgct
gaagttggcgcaggcgacatcctggttggtaaggtcactccgaaaggcgagactcagctg
actccggaagaaaaactgctgcgtgcgatcttcggtgaaaaagccagcgacgttaaagac
acttccctgcgtgtacctaccggtaccaaaggtactgtcatcgacgtacaggtcttcacc
cgcgacggcgttgagcgtgacgctcgtgccctgtcgatcgagaagtcccagctggacgag
atccgcaaggacctgaacgaagagttccgcatcgttgaaggcgctactttcgaacgtctg
cgctccgccctggtcggccacaaagccgaaggtggtgccggtctgaagaaaggccaggac
atcaccgacgaagtgctcgacggtcttgagcacggccagtggttcaaactgcgcatggct
gaagatgctctgaacgagcagctcgagaaggctcaggcctacatcgttgatcgtcgccgt
ctgctggacgacaagttcgaagacaagaagcgcaaactgcagcagggcgatgacctggct
ccaggcgtgctgaaaatcgtcaaggtttacctggcaatccgtcgtcgcatccagccgggc
gacaagatggccggtcgtcacggtaacaaaggtgtggtctccgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcaccccggtcgacgtagtcctcaacccattgggcgta
ccttcgcgtatgaacgtcggtcagatccttgaaacccacctgggcctcgcggccaaaggg
ctgggcgagaagatcaaccgtatggttgaagagcagcgcaaagttgccgagctgcgtaaa
ttcctgcacgagatctataacgagatcggcggtcgtcaggaaagcctcgatgacttctcg
gaccaggaaatcctggatctggctcaaaacctgcgtggcggcgttccaatggccactcca
gtgttcgacggcgccaaggaaagcgaaatcaaggccatgctgaaactggctgacctgcca
gaaagcggccagatgcagctgactgacggccgtaccggcaacaagttcgagcgcccggtt
accgttggctacatgtacatgctgaagctgaaccacttggtagacgacaagatgcacgct
cgttctaccggttcgtacagcctggttacccagcaaccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaggtctgggcactggaagcatacggtgctgcttac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggccggaccaagatgtac
aaaaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaggaaattcgttccctcggcatcgatatcgatctggaaaccgaataa
DBGET
integrated database retrieval system
