Pseudomonas izuensis: LAB08_R58690
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Entry
LAB08_R58690 CDS
T08555
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
piz
Pseudomonas izuensis
Pathway
piz00300
Lysine biosynthesis
piz00470
D-Amino acid metabolism
piz01100
Metabolic pathways
piz01110
Biosynthesis of secondary metabolites
piz01120
Microbial metabolism in diverse environments
piz01230
Biosynthesis of amino acids
Module
piz_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
piz00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
LAB08_R58690 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
LAB08_R58690 (dapF)
Enzymes [BR:
piz01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
LAB08_R58690 (dapF)
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Motif
Pfam:
DAP_epimerase
PhzC-PhzF
Motif
Other DBs
NCBI-ProteinID:
BCX71181
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Position
6537134..6537964
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AA seq
276 aa
AA seq
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MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKLWGDRHTGIGFDQLLIVEAPSNPDVDF
RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKRQIRVETKSGIIELDVRNDGQIGVNM
GAPRLVPADIPFQAPEQALSYQVDVDGTSVELAAVSMGNPHAVLRVSDINNAPVHELGPK
IEHHSRFPARVNVGFLQVIDRGRAQLRVWERGAGETQACGTGACAAAVAAISQGWMDSPL
LIDLPGGRLSIEWAGPGQPVMMTGPAVRVYEGQVRL
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgcgttttaccaagatgcacggcctaggcaatgacttcatggtcctcgacctg
gtcagccagcacgcgcacattctgcccaagcacgccaaattgtggggtgatcggcatacc
ggcatcggtttcgatcagttgctgatcgtcgaagcaccgagcaatccggacgtggatttc
cgttatcggatcttcaattccgacggttccgaagtggaacagtgcggtaacggagcacgt
tgtttcgcccgtttcgtgctcgataaacgcctgaccgcaaaacggcagatccgcgtcgaa
accaaaagcggcatcatcgaactggatgtgcgcaacgacgggcagatcggcgtgaacatg
ggcgcaccgcgcctggttccggccgatattccgttccaggcaccggagcaggccctgagt
tatcaggtcgacgtcgacggtacttcggtcgagttggccgccgtgtccatgggcaacccc
cacgccgtactacgagtcagcgatatcaacaatgcaccggtgcatgaactggggccgaaa
atcgaacatcactcgcgcttcccggcgcgggtcaacgtcggttttctccaggtcatcgac
cggggccgcgcgcagttgcgcgtctgggagcgcggagccggggaaacccaggcctgcggt
accggcgcctgtgccgccgcagtggccgcgatcagccaggggtggatggattcgccacta
ttgatcgacctgcctggcgggcgtctgtccattgaatgggcaggcccaggccaaccggtc
atgatgaccggcccggcagtacgcgtatacgaaggacaagtgcgtctttga
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