Penaeus japonicus (kuruma prawn): 122242260
Help
Entry
122242260 CDS
T07703
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pja
Penaeus japonicus (kuruma prawn)
Pathway
pja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122242260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pja03019
]
122242260
Messenger RNA biogenesis [BR:
pja03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122242260
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122242260
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
NOT1_connector
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
122242260
NCBI-ProteinID:
XP_042855452
LinkDB
All DBs
Position
Unknown
AA seq
2544 aa
AA seq
DB search
MNLDSLTNALSHIGLLVASLTKKNLNSSKEEIQKVVCQFGGEAERHLYRVLIGHLEWSGP
SGGESHRPSPNNINNNNNNNNNKEKESAPNSSGATLSWSAAGSAGCALFVQHLSATLPPT
HFIASLAFAVANPPNPSKYIKSQWVAGVCKVLRLTRVQEIKLCLHLLQGTSLEIRNQATT
VLKAKLPELVRAYVDTDSEDRELLELSTESLHLLLIHIVHLWRDPPAALLPQESRQAFIS
ALQQEFPRSRVPVVLAPLLYPDTDILMEKITQEQPANMAKNLLDGSLADLVRELGYSFCS
TVEECRSNLGNFCVTSITPAAVAKVLGVMVRTHTGLPAEQIGLQNLNSPNSLWSDTKDKS
SNNQTTSSSSDVTLGGSGGLSGPHCWNVEVFIKALLEVVPSINVKEVFNKLDHKGFLVKD
RQGLKLLITALRCLLQGQGLRLELFPVECFYQQWKNTEEQLNLFTQILRNPEIFCLTDFP
CHLVSTDSLKTLPELDNKEVATWKSVQLIDTLLYLGENHYTAVKEIFKFPIQHCPDILVL
GLIQATLPYTILRQDLIASLIPIFLGNHPNAAIILHHAWHTQNNATTVRQIIMHAMAEWY
MMVENDQTRLSRILDVAQDLKALSLLLNAQPFPFVIDLACLAYRREFLKLDKWLTDKIRE
HGEAFISACVKFLQRRCPHLVGGKEDGMQKSSQLPPETMATILVCLNACALNVSQELSDT
IVTMVQHCNLMNRPRTQQGVIGFPGPSQQTSEGSLGGIASSLSSLNLGGGGGTSSIFPTS
GSSSMSLGSLGSLGTAPGSPGRPLGPSTAPGTSQSPLSSILPALQLGPPHAAAVGSQLPT
LPTSSIIPSSLRSHSVQPTVNPPSRQMDMSQIFDMPQMVSKEVEDEANSYFQRIYNHPPH
PTLSIEEVLDMLKKFHESTNKREREVYSCMLRNLFEEYRFFPTYPDKELFTTARLFGGII
EQGLVEYMALGVALRYVMEALQKPHGSKMYYFGIVALDRFRSRLKEYPRYCQHLMAIQHF
NEFPPHLIEYIKYGTQSQEPPSRPSGVVLPPSMNVSPSTPAPGTSAVAVTGTVVQPPTAA
VSAVVSSVAKTLTATTTTTTTTAITRPQSMSVPSAPVGSGKQPTITTTNIETLLVATEKE
EKITPPPEHMQDKIAFIFNNLSQVNLPQKCEELREVVSEEYWVWVAQYLVMKRASIENNF
HTLYSLFLDQLKMNNFNAMVCRETLRNIKVLLRADKSAANFSDKSLLKNLGHWLGMLTLA
KNKPILYSDIDMKSLLVESYNKGLQEMQYVIPFVAKVMESCAKSRVFKPPNPWTIAIMNV
LAELHKEPDMKLHLKFEIEVLCNKLEINLEDLKPANILNDRERIARLKPQLSQPGGSKRA
ESTPLFPALQGFSSSSSFMHPMNTGSRWVANPNINHAPGHEVINQAKTSWSQMGAPGQVE
MPTSTVTVQSSSVGATPTPPSVLPPHPSSTPTPIQSQQPSVNEPRFIYSDITVTSLRGLE
PHISVSVPQVGGIASNAQLKQLVRHAVEMAVQEIVTAVLERSIKIAITTAEHIIKKDFAL
DPDESRMRVATHHMVRNLTAAMAMITCRDYLATNIAKSIKQGLMQAFSRTNQQQLPQQLE
QMEQLAAAIAQENVGIACAFIQKTAAEKAVIEMDKRLAQEYEVRKAARTEGRRYCDAVVL
TYQAERMPEPIRLKVGGVTQPQMAVYEEFARNIPGFLPITDQDTMFLTKPVPLSSQQQQQ
QPPHSQQQAFGSDETTAFLLLTERISAELEHTIQAFTTLAPSSSLIPMLHSLREGLLLTR
TNRDAHAAQLLLRKAVENLLEGARELPTEPELSQLALRFRDCHLIVLKAMADHRSYGTNW
TSKNVTKCWAESREELKYNLDVVDWLIRSNLLNMQLLDEHLARTLDDPRLPSYIPSFFIM
QLVQIYLVDDPSNSFLSESDLQLTLEALVRMCHSRQAPEGLVPLIDALRLKHDLLASERL
AGGSSLSGTNSALAAGPSLHFHSGVTQARDFSDPPALQEKTEVLLREWIQMYHSPTAGQG
SASAFQHFVKQMNLHGILKTDDLITRFFRICISMCRDLCVRSILEQGQGPSPTYVRSKCF
QNLDAFVRLIALLVKHSGEATNPTTKINLLNKVLGLVCGIMIHDIESNGTEFQQLPYHRI
LIMLFLELNAPEAILESINLPVCEVLMAFTQTLHLLRPSKCPGFAYAWLEIVSHRVFIGR
MLAITPQQKGWSMYSMLLADLFKFLAPFLRNAELAKPLTMLYKGTLRVLLVLLHDFPEFL
CEYHYGFCDVIPPNCIQMRNLILSAFPRNMRLPDPFTPNLKVDMLPEITVSPKIPTNVAS
LIQPPELKKNLDSYLKNRTPVTFLSDMRTFLQVNNEPGMRYNMSVMNALVLYVGMQAIAQ
IHSKGLTPSMSTIAHSAHMDIFQNLGVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLL
HLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPSFKFWSHEFVKCAPEI
EKLFESVARSCMVQKIAPRGDSEA
NT seq
7635 nt
NT seq
+upstream
nt +downstream
nt
atgaacctagactcgctaactaatgctttgtctcatattggtctcttggtcgccagtttg
acaaagaaaaacctgaactctagtaaggaagagattcagaaagtggtgtgtcagtttggt
ggagaggcagagcgacacttgtaccgggtgttgattggtcacttggagtggtctgggccg
tcaggcggagaatctcaccgaccttcacctaacaacatcaacaacaacaacaacaacaac
aataacaaagagaaggagagtgcccccaactcgagtggagccaccctctcgtggtcggca
gcaggctctgctggctgtgcactcttcgtgcagcacttgtctgccacactccctcctaca
catttcatcgccagtcttgcgtttgctgttgcaaacccccccaacccaagcaagtatata
aaaagccagtgggttgctggtgtgtgcaaagtactcaggcttaccagagtacaagaaatc
aaactctgtttacatcttctacaaggaacaagtcttgaaatacgtaaccaggccacaact
gtactgaaagctaagctcccggaacttgttcgggcgtacgttgacacagattcagaagac
agggaactcttggagttatccactgaatctctgcacctgttgctaatccatatcgtccac
ctgtggcgagaccccccagcagcactcctacctcaagaatcaagacaagcatttatctcg
gcacttcagcaggagtttcctcgatctcgcgtgcctgtcgttcttgctccccttctctat
ccagatacagatatactaatggagaagatcacacaagagcaaccagccaacatggccaag
aatttactggatgggtctctggcggacttagtccgtgaattaggctacagtttctgtagc
acggtggaagaatgcagaagcaaccttgggaacttctgtgtgacctccataacaccagca
gctgttgccaaggtccttggtgttatggtgcgcactcacacgggcctgccagcagaacag
attggtctccagaacctcaactccccaaactcgctatggagcgacacaaaagacaagagc
tcaaataaccaaacaaccagctcaagtagcgacgtgacccttggcggctcagggggcctc
tcgggtcctcactgctggaatgtggaggtattcatcaaggcactcctggaggtagtcccc
agcatcaatgtgaaggaggttttcaacaagctggaccacaagggcttcttggtcaaggac
agacaaggtctcaaactgcttatcacagcacttcgatgcctcctccagggccagggctta
cggctggaattatttcctgtggaatgcttctaccagcagtggaagaacaccgaggagcag
ctcaatctgtttacgcagatcctcagaaatcctgaaatattttgcctcaccgatttccct
tgccatttagtgtcaacagatagcttgaagacactgccagagcttgacaataaagaggtg
gctacatggaagtcagtacaactaatagacactctcctttacctcggagagaatcactat
acggctgtgaaggagattttcaagtttcccattcaacattgtccagatatccttgtcctt
ggtttaatacaagcaacactaccatacaccatcttgcggcaagatctgattgcttctctc
attccaatatttttggggaaccacccaaatgcagcaataatccttcatcatgcttggcac
acacagaacaatgcaactacagtccgccagattatcatgcatgccatggcagaatggtat
atgatggtggagaatgaccagacaagactaagcagaattcttgatgtcgcccaagatctg
aaagccctctcacttctcctcaatgctcagcctttcccatttgtgatagatttggcttgt
ttggcctacagacgtgagtttctgaagctggacaagtggctgacagataagatccgtgag
cacggagaggcattcatctcggcctgtgtcaagttccttcagcgccggtgccctcatctg
gttggcggtaaggaggatgggatgcagaagtcctcgcaactccctccagaaaccatggcc
accattctcgtgtgtctgaacgcttgcgctttgaacgtgtctcaagaactgtctgacacc
attgtgaccatggttcaacattgtaacctaatgaacagacctcgaacacagcaaggagtg
attggcttccctggtccatcacagcagacgagtgaaggcagcctgggcggcatagcctct
agcctgagcagcctgaatctgggtggtggaggtggcacatcctccatctttccaacctct
ggctcatcatccatgagcctgggcagccttgggtctctaggcacggcaccaggatcccct
gggcgtcccctgggtccctcaactgcccctgggacatcgcaatctcccctctcctccatc
ctgcccgctttgcagctaggaccaccacatgcagcagctgtgggctcccaactgcccacc
ctgccaacctcgtccatcatcccatcgtctctgaggtcgcattcggtacaacccacagtc
aacccccccagccggcagatggacatgtcccaaatcttcgacatgcctcaaatggtgagc
aaagaggttgaagatgaagccaatagctacttccagcgtatctacaatcatccaccccat
cctacgctctccattgaggaggttctggacatgctgaagaaattccacgaatcgaccaac
aagagggaaagggaggtatattcatgtatgctccgcaatcttttcgaagagtatcgtttc
ttccccacctacccagacaaagaacttttcaccactgccaggctgtttggtggcatcatt
gaacagggtctagtcgaatatatggccttaggtgtagcactcaggtatgttatggaagct
ctccagaaaccgcacggaagcaagatgtactactttggcattgtggcactggataggttt
cgcagtcgcttgaaggaataccctcgctattgtcagcacctcatggctattcagcatttc
aatgaatttcctccacatcttatagagtacatcaagtacggaacacagtcacaggaaccc
ccctcgcgtccctctggcgttgtgctccctccttccatgaatgtgtcgccaagcaccccc
gccccaggcacctcggcagtagctgttaccggcactgtcgtccagccacccactgctgcg
gtgtcagctgtggtgtcatcagttgccaagaccctcactgccaccaccaccacgacaacc
accactgccatcaccagaccccagtcaatgtctgttccatcagcgccagtgggatcagga
aagcaaccaacaatcacaacaaccaacattgaaacactgttagttgccacggaaaaagaa
gaaaagattactcctcctcctgagcatatgcaagataaaattgccttcattttcaacaat
ctttctcaagtcaaccttcctcaaaagtgcgaagagctacgtgaagtggtcagcgaggag
tattgggtttgggttgcccagtatctagtaatgaagcgagcctccattgaaaacaacttc
cacactctctattccttgttcctcgatcagctgaagatgaacaacttcaatgcaatggtt
tgcagggaaactttaaggaatataaaggtactcctaagggctgataagtctgcagccaac
ttctctgacaagtcgctgctgaagaacctcggacattggctgggcatgttgaccctggcc
aagaataagcccatcctctactcagacatcgatatgaagtcattgcttgttgagtcttac
aacaaaggcctacaggaaatgcagtatgtgattccatttgtggccaaggtaatggagtct
tgtgcaaagagccgtgtctttaagcctcccaacccttggaccattgccataatgaatgtg
ttagcagagctccacaaggaacctgacatgaagctccatctcaagttcgaaattgaagtt
ctgtgtaataagttggaaattaatttggaggacctgaagccagcaaacatcctgaacgac
cgggagcgaattgcccgcctgaagccccagctgtcacagcctggaggatccaaacgggcc
gagtcgaccccacttttcccagctctgcaaggattctcttcatcttccagtttcatgcac
ccgatgaatactggcagccgatgggtagccaatccgaatataaaccacgcgccgggacac
gaagtcatcaatcaagcaaagacaagttggtcacaaatgggtgcaccagggcaggtggag
atgcccaccagcacagtcactgtacagagctcgtctgtgggtgccacgccaacccctcca
tcagtgctgcctccccatccctcctccactccaacacctatacagtctcagcaaccatcg
gtcaacgagccgcgcttcatctactctgacatcaccgtcacgtcccttcgggggcttgag
cctcacatatctgtctcagtacctcaggttggtggcattgcaagcaatgctcagttgaaa
cagcttgtgcgacatgctgtagaaatggcagtccaggaaatagtgacagctgtattggag
cgcagtatcaagattgccatcaccacagcagagcacataatcaagaaggactttgctctg
gacccagatgagtctcggatgcgagttgcaacacaccacatggtgcgcaacttgacagca
gcaatggcaatgataacttgcagagattatctggctacaaatattgccaagagcatcaag
cagggattgatgcaggctttttcacgaacaaatcaacagcagctgccacaacagctagag
cagatggagcagctggctgcagccattgctcaggagaatgtgggtatagcttgtgccttt
attcagaaaactgctgcagagaaggctgtgattgaaatggataagaggctggcacaggaa
tacgaggtgaggaaagcggcaaggacagagggccgccgctactgcgatgctgtggttctg
acataccaggcagagcggatgccagagcccatccgcctgaaagttggtggcgtcactcaa
ccccaaatggctgtgtatgaagagtttgcccggaacatcccaggcttcctgcccatcact
gatcaggacaccatgttcttgactaagcctgttcctctaagctcacaacaacagcagcag
caacccccacactcacaacagcaggcctttggaagcgatgagacaacagccttcctgctt
ctgacagagcgcatcagtgctgagctggaacacaccatccaggcctttacaaccctagcc
ccctcatcctccctcatccccatgctgcactcactcagggagggactgctgctcacccgg
accaaccgagatgcacacgccgctcagctgctgcttaggaaggctgtggagaacctcctg
gagggtgcacgagagctgccaactgaaccagaactgagtcagcttgcccttcggttccgc
gactgccacctaatcgtcttgaaggccatggctgatcaccgttcctatggaaccaactgg
acatcgaagaatgttaccaaatgctgggctgaatcccgtgaggagttgaagtacaactta
gatgttgttgactggctgatccgttccaatttgctgaacatgcagttgctggatgaacac
cttgctagaactctagatgacccaaggcttccatcctacatcccttcattcttcatcatg
cagcttgttcagatatacctcgttgacgaccccagcaacagcttcctgagtgaatcagac
ttgcagctaacactggaggccttagtgcgcatgtgccactcccgtcaggctccagaaggc
cttgtgcccctcattgacgcactgcggctgaagcacgacttactagcaagcgagcggcta
gcaggaggcagtagcctcagtggcacaaacagtgccctggctgctgggccaagcctacac
ttccattcaggcgtaacacaggccagggacttcagcgaccctccagcccttcaggagaag
acagaggtgttgctgcgggagtggattcagatgtaccattccccaacagctggccagggg
tcagcctctgccttccagcacttcgtgaagcaaatgaatcttcacggaatcctcaaaaca
gatgatctcataaccaggttcttcaggatctgcataagcatgtgtcgtgatctttgtgtt
cgatccattcttgagcaaggccaaggaccatctcctacttatgttcgcagcaaatgcttc
cagaatctggatgcatttgtacgtctcattgccttattagtcaaacattcgggggaggca
acgaacccaaccactaagatcaatcttcttaataaggtcttaggactcgtgtgtggtatc
atgatccatgacattgaatcaaatggcaccgagttccaacagcttccatatcaccgcatc
ctcatcatgcttttccttgagctcaacgccccagaagcgatcctagagtccatcaacctt
ccggtatgtgaagtccttatggccttcacccaaactctacatctgcttcgcccaagtaag
tgcccagggtttgcctatgcctggctggagattgtgagccaccgcgtcttcatcggccgc
atgctggccatcactccccagcagaagggctggtccatgtactccatgctcttggccgat
ctctttaaattcctggcacccttcctgcggaatgcagagctcgccaagcctctgacaatg
ctctataagggtacactacgtgtgctgctagtcctgctccatgatttcccggagttctta
tgtgaataccactatggtttctgtgatgtcatccctccaaactgcatccaaatgcgcaat
ctcatcctctcggctttccctcggaacatgaggctccccgaccccttcacccctaacttg
aaagtggacatgctgcccgagattacagtctcccccaagatccccactaacgtcgccagc
ctcatccagcccccagaactaaagaaaaacttggattcctacttgaagaacaggacgcct
gtcaccttcctttcagacatgcggaccttcttgcaggtcaacaatgaaccggggatgcgc
tacaacatgtctgtgatgaacgctttggtgctctatgttggcatgcaggctattgctcag
atccacagcaaaggcctaactccatccatgtctaccattgctcattccgcccacatggac
atattccagaatcttggtgttgatttagacacagaaggtcgctatctgttcctgaacgcc
attgccaaccagctgcgataccccaacagccacacccactacttcagttgcacacttctc
catctctttgctgaagccaacactgaagccatccaagagcagattacaagggtgctgttg
gaacgactgattgtcaatcggccacacccctgggggctcctcatcaccttcatcgagctc
atcaagaacccatccttcaagttctggagccatgagttcgtgaagtgtgctccggagatc
gagaagctatttgagtcggtggcgcgctcctgcatggtgcagaagatcgcaccaagaggg
gattcagaggcctga
DBGET
integrated database retrieval system
